From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Tue, 20 Sep 2005 16:38:27 +0000 (+0000)
Subject: refactored to vamsas.xsd
X-Git-Tag: Release_0.2~480
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=d211ea817b34f50727ce9e89357b5d12a23b17f6;p=vamsas.git

refactored to vamsas.xsd


git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@40 be28352e-c001-0410-b1a7-c7978e42abec
---

diff --git a/schemas/vamsas15_9.xsd b/schemas/vamsas15_9.xsd
deleted file mode 100644
index dd12108..0000000
--- a/schemas/vamsas15_9.xsd
+++ /dev/null
@@ -1,179 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!-- edited with XMLSPY v5 rel. 4 U (http://www.xmlspy.com) by MSD (EMBL OUTSTATION THE EBI WELLCOME TRUST GENOME CAMPUS) -->
-<!-- edited with XMLSpy v2005 rel. 3 U (http://www.altova.com) by lj (jl) -->
-<xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:vamsas="http://www.vamsas.org" targetNamespace="http://www.vamsas.org" elementFormDefault="qualified" attributeFormDefault="unqualified">
-	<xs:element name="Version" type="xs:string"/>
-	<xs:complexType name="LockFile">
-		<xs:simpleContent>
-			<xs:extension base="xs:string"/>
-		</xs:simpleContent>
-	</xs:complexType>
-	<xs:complexType name="VAMSAS">
-		<xs:sequence>
-			<xs:element ref="vamsas:Tree" minOccurs="0" maxOccurs="unbounded"/>
-			<xs:element ref="vamsas:SequenceSet" minOccurs="0" maxOccurs="unbounded"/>
-		</xs:sequence>
-		<xs:attribute name="id" type="xs:ID"  minOccurs="0" maxOccurs="1"/>
-    </xs:complexType>
-    <xs:element name="Tree">
-	 	<xs:complexType>
-	        <xs:sequence>
-	        	<xs:element name="title" type="xs:string" minOccurs="0" maxOccurs="1"/>
-    			<xs:element name="newick" minOccurs="1" maxOccurs="unbounded">
-    			  <xs:complexType>
-    			  <xs:simpleContent>
-    			  <xs:extension base="xs:string">
-    			  <xs:attribute name="title" type="xs:string" minOccurs="0" maxOccurs="1"/>
-        		  <xs:attribute name="id" type="xs:ID" minOccurs="0" maxOccurs="1"/>
-    			  </xs:extension>
-    			  </xs:simpleContent>
-    			  </xs:complexType>
-    			</xs:element>
-        		<xs:element ref="vamsas:Provenance" minOccurs="1" maxOccurs="1"/>
-		    </xs:sequence>
-        	<xs:attribute name="id" type="xs:ID" minOccurs="0" maxOccurs="1"/>
-    	</xs:complexType>
-	</xs:element>
-	<xs:element name="Provenance">
-		<xs:complexType>
-			<xs:sequence>
-				<xs:element name="entry" minOccurs="0" maxOccurs="unbounded">
-					<xs:complexType>
-						<xs:sequence>
-							<xs:element name="User" type="xs:string"/>
-							<xs:element name="Action" type="xs:string"/>
-							<xs:element name="Date" type="xs:date"/>
-						</xs:sequence>
-						<xs:attribute name="id" type="xs:ID"  minOccurs="0" maxOccurs="1"/>
-					</xs:complexType>
-				</xs:element>
-			</xs:sequence>
-		</xs:complexType>
-	</xs:element>
-
-	<xs:element name="SequenceSet">
-		<xs:complexType>
-			<xs:sequence>
-				<xs:element name="Sequence" maxOccurs="unbounded">
-					<xs:complexType>
-						<xs:complexContent>
-							<xs:extension base="vamsas:SequenceType">
-								<xs:sequence>
-								    <xs:element name="dbRef" minOccurs="0" maxOccurs="unbounded">
-									<xs:complexType>
-										<xs:attribute name="source"/>
-										<xs:attribute name="version"/>
-										<xs:attribute name="accessionId"/>
-										<xs:attribute name="id" type="xs:ID" minOccurs="0" maxOccurs="1"/>
-									</xs:complexType>
-									</xs:element>
-								</xs:sequence>
-								<xs:attribute name="id" type="xs:ID" minOccurs="1" maxOccurs="1"/>
-								<xs:attribute name="dictionary" type="xs:string"/>
-							</xs:extension>
-						</xs:complexContent>
-					</xs:complexType>
-				</xs:element>
-				<xs:element name="SequenceSetAnnotations" minOccurs="0" maxOccurs="unbounded">
-					<xs:complexType>
-						<xs:sequence>
-							<xs:element name="description" type="xs:string" minOccurs="0"/>
-							<xs:element name="status" type="xs:string" minOccurs="0"/>
-							<xs:element ref="vamsas:annotationElement" minOccurs="0" maxOccurs="unbounded"/>
-							<xs:element ref="vamsas:Provenance" minOccurs="0" maxOccurs="unbounded"/>
-						</xs:sequence>
-						<xs:attribute name="type" type="xs:string" use="required"/>
-						<xs:attribute name="end" type="xs:string" use="required"/>
-						<xs:attribute name="begin" type="xs:string" use="required"/>
-						<xs:attribute name="seqRef" type="xs:IDREF" use="required"/>
-						<xs:attribute name="id" type="xs:ID" minOccurs="0" maxOccurs="1"/>
-					</xs:complexType>
-				</xs:element>
-				<xs:element name="Alignment" minOccurs="0" maxOccurs="unbounded">
-					<xs:complexType>
-						<xs:sequence>
-							<xs:element name="AlignmentAnnotations" minOccurs="0">
-								<xs:complexType>
-									<xs:sequence>
-										<xs:element ref="vamsas:annotationElement" maxOccurs="unbounded"/>
-										<xs:element name="label" type="xs:string"/>
-										<xs:element name="description" type="xs:string"/>
-										<xs:element ref="vamsas:Provenance"/>
-									</xs:sequence>
-									<xs:attribute name="graph" type="xs:boolean" use="required"/>
-									<xs:attribute name="id" type="xs:ID" minOccurs="0" maxOccurs="1"/>
-								</xs:complexType>
-							</xs:element>
-							<xs:element ref="vamsas:Tree" minOccurs="0" maxOccurs="unbounded"/>
-							<xs:element name="alignmentSequence" minOccurs="2" maxOccurs="unbounded">
-								<xs:complexType>
-									<xs:complexContent>
-										<xs:extension base="vamsas:SequenceType">
-											<xs:attribute name="id" type="xs:ID" minOccurs="0" maxOccurs="1"/>
-											<xs:attribute name="refid" type="xs:IDREF" use="required"/>
-										</xs:extension>
-									</xs:complexContent>
-								</xs:complexType>
-							</xs:element>
-							<xs:element ref="vamsas:Provenance"/>
-						</xs:sequence>
-						<xs:attribute name="id" type="xs:ID" minOccurs="0" maxOccurs="1"/>
-					</xs:complexType>
-				</xs:element>
-				<xs:element ref="vamsas:Tree" minOccurs="0" maxOccurs="unbounded"/>
-				<xs:element ref="vamsas:Provenance"/>
-			</xs:sequence>
-			<xs:attribute name="gapChar" type="xs:string" use="required"/>
-			<xs:attribute name="aligned" type="xs:boolean" use="optional"/>
-			<xs:attribute name="id" type="xs:ID"  minOccurs="0" maxOccurs="1"/>
-		</xs:complexType>
-	</xs:element>
-	<xs:element name="annotationElement">
-		<xs:complexType>
-			<xs:sequence>
-				<xs:element name="displayCharacter" type="xs:string"/>
-				<xs:element name="description" type="xs:string"/>
-				<xs:element name="secondaryStructure">
-					<xs:simpleType>
-						<xs:restriction base="xs:string">
-							<xs:length value="1"/>
-						</xs:restriction>
-					</xs:simpleType>
-				</xs:element>
-				<xs:element name="value" type="xs:float"/>
-			</xs:sequence>
-			<xs:attribute name="position" type="xs:int" use="required"/>
-			<xs:attribute name="id" type="xs:ID"  minOccurs="0" maxOccurs="1"/>
-		</xs:complexType>
-	</xs:element>
-    <xs:complexType name="SequenceType">
-		<xs:sequence>
-			<xs:element name="sequence" type="xs:string"/>
-			<xs:element name="name" type="xs:string"/>
-		</xs:sequence>
-		<xs:attribute name="start" type="xs:int" use="required"/>
-		<xs:attribute name="end" type="xs:int" use="required"/>
-	</xs:complexType>
-	
-    <xs:complexType name="ApplicationData">
-		<xs:sequence>
-			<xs:element name="Application">
-				<xs:complexType>
-					<xs:sequence>
-					  <xs:element name="User">
-					  <xs:complexType>
-					  	<xs:attribute name="fullname" type="xs:string"/>
-					  	<xs:attribute name="organization" type="xs:string"/>
-					  	<xs:attribute name="data" type="xs:string"/>
-					  </xs:complexType>
-					  </xs:element>
-					</xs:sequence>
-					<xs:attribute name="version" type="xs:string"/>
-					<xs:attribute name="name" type="xs:string"/>
-					<xs:attribute name="urn" type="xs:string"/>
-					<xs:attribute name="data" type="xs:string"/>
-				</xs:complexType>
-			</xs:element>
-		</xs:sequence>
-	</xs:complexType>
-</xs:schema>