From: tcofoegbu <tcnofoegbu@dundee.ac.uk>
Date: Tue, 28 Apr 2015 10:49:30 +0000 (+0100)
Subject: JAL-1711 and JAL-1714 documentation updated
X-Git-Tag: Jalview_2_9~40^2~1^2
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=d26d84a079b512973f50703ff2367a62da9efc2e;p=jalview.git

JAL-1711 and JAL-1714 documentation updated
---

diff --git a/help/html/features/pdbsequencefetcher.html b/help/html/features/pdbsequencefetcher.html
index 3d0eedb..0a7802e 100644
--- a/help/html/features/pdbsequencefetcher.html
+++ b/help/html/features/pdbsequencefetcher.html
@@ -38,11 +38,12 @@
 		as the choice database from the <strong>'Select Database
 			Retrieval Source'</strong> interface of <a href="seqfetch.html">Sequence
 			Fetcher</a>.
-	</p><br>
+	</p>
+	<br>
 
 	<img src="pdbseqfetcher.png" align="left"
 		alt="PDB sequence fetcher (introduced in Jalview 2.x.x)">
-		
+
 	<br>
 	<p>
 		<strong>Searching the PDB Database</strong><br> Once the
@@ -52,19 +53,20 @@
 		field to search by in the PDB database, the default option is <strong>'ALL'</strong>.
 		Furthermore, the PDB search interface also provides the following
 		functionalities:
-	
 	<ul>
-		<li>Retrieving a unique chain for a PDB entry: <br>To retrieve a
-			specific chain for a PDB entry, append the PDB ID with a colon
-			followed by the chain code in the search box. eg: 1xyz:A
-			 </li>
+		<li>Retrieving a unique chain for a PDB entry: <br>To
+			retrieve a specific chain for a PDB entry, append the PDB ID with a
+			colon followed by the chain code in the search box. eg: 1xyz:A
+		</li>
 
-		<li>Querying multiple PDB Id's in one operation:<br>The PDB search 
-		interface supports querying of multiple PDB Ids in one operation by
-		separating the list of PDB Ids with a semi-colon i.e: 1xyz;2xyz;3xyz </li>
+		<li>Querying multiple PDB Id's in one operation:<br>The PDB
+			search interface supports querying of multiple PDB Ids in one
+			operation by separating the list of PDB Ids with a semi-colon i.e:
+			1xyz;2xyz;3xyz
+		</li>
 
-		<li>Wild card searching: <br>The PDB sequence fetcher also provides
-			support for wild card querying of the PDB database. <br>Single
+		<li>Wild card searching: <br>The PDB sequence fetcher also
+			provides support for wild card querying of the PDB database. <br>Single
 			character (matches a single character) - ? The search string te?t
 			would match both test and text. <br>Multiple characters (matches
 			zero or more sequential characters) - * The wildcard search: tes* -
@@ -74,12 +76,16 @@
 		</li>
 	</ul>
 	<p>
-		<strong>Customising displayed meta-data</strong> <br>To change the
-		displayed meta-data in the search result, click the <strong>'Configure
-			Displayed Columns'</strong> tab, then tick off the options wanted. 
+		<strong>Customising displayed meta-data</strong> <br>To change
+		the displayed meta-data in the search result, click the <strong>'Configure
+			Displayed Columns'</strong> tab, then tick off the options wanted.
+	</p>
+	<p>
+		<strong>Importing Sequence</strong><br> After querying the PDB
+		database, to import the found data into Jalview, select the entries
+		you wish to import then click the ok button at the bottom of the
+		interface.
 	</p>
-	<p><strong>Importing Sequence</strong><br>
-	After querying the PDB database, to import the found data into Jalview, select the entries you wish to import then click the ok button at the bottom of the interface.</p>
 	<p>
 		<em>The PDB Sequence Fetcher interface was introduced in Jalview
 			2.x.x.</em>