From: Jim Procter <jprocter@issues.jalview.org>
Date: Fri, 14 Feb 2020 16:06:56 +0000 (+0000)
Subject: JAL-3532 TODO comment
X-Git-Tag: Develop-2_11_2_0-d20201215~35^2~5
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=d284df057dccb23cccc3609532406b876c3e2e2f;p=jalview.git

JAL-3532 TODO comment
---

diff --git a/src/jalview/io/StockholmFile.java b/src/jalview/io/StockholmFile.java
index c3b0a69..b9f1274 100644
--- a/src/jalview/io/StockholmFile.java
+++ b/src/jalview/io/StockholmFile.java
@@ -529,6 +529,9 @@ public class StockholmFile extends AlignFile
               treeName = an.stringMatched(2);
               treeString = new StringBuffer();
             }
+            // TODO: JAL-3532 - this is where GF comments and database references are lost
+            // suggest overriding this method for Stockholm files to catch and properly
+            // process CC, DR etc into multivalued properties
             setAlignmentProperty(an.stringMatched(1), an.stringMatched(2));
           }
         }