From: cmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Date: Fri, 25 Oct 2013 00:54:40 +0000 (+0000)
Subject: cleanup
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=d413f475ecae87bc91da006a98c7dfc6be19a9cc;p=jalview.git

cleanup
---

diff --git a/forester_applications/src/org/forester/applications/simple_node_processor.java b/forester_applications/src/org/forester/applications/simple_node_processor.java
index c4bdfac..c2d832b 100644
--- a/forester_applications/src/org/forester/applications/simple_node_processor.java
+++ b/forester_applications/src/org/forester/applications/simple_node_processor.java
@@ -87,7 +87,7 @@ public class simple_node_processor {
     //            }
     //        }
     //    }
-    private static void processNode( final PhylogenyNode node, final int i, Phylogeny phy ) {
+    private static void processNode( final PhylogenyNode node, final int i, final Phylogeny phy ) {
         //if ( node.isExternal() ) {
         //    final String c = "" + node.getNodeData().getBinaryCharacters().getPresentCount();
         //    final String s = node.getNodeData().getTaxonomy().getScientificName();
@@ -107,14 +107,14 @@ public class simple_node_processor {
         //            }
         //        }
         if ( node.isExternal() ) {
-//            if ( node.getNodeData().isHasTaxonomy() ) {
-//                final Taxonomy t = node.getNodeData().getTaxonomy();
-//                if ( !ForesterUtil.isEmpty( t.getTaxonomyCode() ) && ( t.getTaxonomyCode().length() == 5 ) ) {
-//                    if ( node.getName().equalsIgnoreCase( t.getTaxonomyCode() ) ) {
-//                        node.setName( "" );
-//                    }
-//                }
-//            }
+            //            if ( node.getNodeData().isHasTaxonomy() ) {
+            //                final Taxonomy t = node.getNodeData().getTaxonomy();
+            //                if ( !ForesterUtil.isEmpty( t.getTaxonomyCode() ) && ( t.getTaxonomyCode().length() == 5 ) ) {
+            //                    if ( node.getName().equalsIgnoreCase( t.getTaxonomyCode() ) ) {
+            //                        node.setName( "" );
+            //                    }
+            //                }
+            //            }
             if ( node.getNodeData().isHasTaxonomy() ) {
                 final Taxonomy t = node.getNodeData().getTaxonomy();
                 if ( !ForesterUtil.isEmpty( t.getTaxonomyCode() ) ) {