From: Jim Procter <jprocter@dundee.ac.uk>
Date: Tue, 15 Apr 2014 17:11:07 +0000 (+0100)
Subject: JAL-1473 tree calcs performed with ScoreModelI instances
X-Git-Tag: Jalview_2_9~123^2~48
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=d5ad9ef13d6f9d542e89d97b82cbd86b11ed7bae;p=jalview.git

JAL-1473 tree calcs performed with ScoreModelI instances
---

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 5160a3a..fd6fe24 100644
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -27,6 +27,7 @@ import jalview.analysis.ParseProperties;
 import jalview.analysis.SequenceIdMatcher;
 import jalview.api.AlignViewControllerGuiI;
 import jalview.api.AlignViewControllerI;
+import jalview.api.analysis.ScoreModelI;
 import jalview.bin.Cache;
 import jalview.commands.CommandI;
 import jalview.commands.EditCommand;
@@ -3897,7 +3898,7 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
       for (final Object pwtype: ResidueProperties.scoreMatrices.keySet())
       {
         JMenuItem tm = new JMenuItem();
-        ScoreMatrix sm = (ScoreMatrix) ResidueProperties.scoreMatrices.get(pwtype);
+        ScoreModelI sm = ResidueProperties.scoreMatrices.get(pwtype);
         final String title="Calculate "+type+" using "+sm.getName();
         tm.setText(title);// MessageManager.getString("label.neighbour_blosum62"));
         tm