From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Mon, 21 May 2007 07:28:00 +0000 (+0000)
Subject: test cdoc object retrieve by VorbaId and add timeout for hanging around (needs to... 
X-Git-Tag: Release_0.2~121
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=d5ae6920a5b10289c55ccff8bf0aaf39c821a908;p=vamsas.git

test cdoc object retrieve by VorbaId and add timeout for hanging around (needs to be a specific command)

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@399 be28352e-c001-0410-b1a7-c7978e42abec
---

diff --git a/src/uk/ac/vamsas/test/ExampleApplication.java b/src/uk/ac/vamsas/test/ExampleApplication.java
index 6673129..3ac5cd3 100644
--- a/src/uk/ac/vamsas/test/ExampleApplication.java
+++ b/src/uk/ac/vamsas/test/ExampleApplication.java
@@ -67,14 +67,22 @@ public class ExampleApplication
 
   private boolean isFinalizing = false;
   private int totalUpdates = 9;
+  private uk.ac.vamsas.client.VorbaId recover = null;
   private void processVamsasDocument(IClientDocument doc)
   {
     if (doc.getVamsasRoots().length<4) {
-    doc.addVamsasRoot(Core.getDemoVamsas());
+      doc.addVamsasRoot(Core.getDemoVamsas());
     } else {
       try {
         uk.ac.vamsas.objects.core.DataSet ds = doc.getVamsasRoots()[1].getDataSet(0);
         uk.ac.vamsas.objects.core.AlignmentSequence alsq = ds.getAlignment(0).getAlignmentSequence(0);
+        if (recover==null)
+        {
+          recover = alsq.getVorbaId();
+        } else {
+          Vobject recoverd = doc.getObject(recover);
+          System.out.println("Recovery of "+recover+" was "+((recoverd==null) ? "A FAILURE" : "SUCCESSFUL"));
+        }
         System.out.println("Modifying Sequence:\n"+alsq.hashCode());
         alsq.setSequence(alsq.getSequence()+ds.getAlignment(0).getGapChar());
         System.out.println("Modifying Sequence:\n"+alsq.hashCode());
@@ -262,7 +270,7 @@ public class ExampleApplication
     }
 
   }
-
+  long shutdown = -1;
   public void runMe(String[] args)
   {
     if (!parseArgs(args))
@@ -372,10 +380,13 @@ public class ExampleApplication
         {
           System.out
           .println("Received |" + message.getRawMessage() + "|");
+          shutdown +=100; // hang around for 5 seconds or so before dying naturally. 
+          
         }
 
       });
     }
+    shutdown = System.currentTimeMillis()+10000; // hang around for 10 seconds or so before dying naturally. 
     while (!isShuttingdown && update < totalUpdates)
     {
       // do something with data
@@ -388,6 +399,7 @@ public class ExampleApplication
         System.out
         .println("******************************************");
         isUpdated = false; // TODO: saner update det method.
+        shutdown = System.currentTimeMillis()+10000;
         if (update % 2 == 1)
         {
           try
@@ -402,6 +414,11 @@ public class ExampleApplication
             e.printStackTrace(System.err);
           }
         }
+      } else {
+        if (System.currentTimeMillis()>shutdown)
+        {
+          isShuttingdown=true;
+        }
       }
 
       try	{ Thread.sleep(50); }