From: jprocter Date: Fri, 8 Apr 2005 13:12:43 +0000 (+0000) Subject: recent rebuild of the JPred client from WSDL2Java X-Git-Tag: Release_2_0~460 X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=d60b0ff03de123c995beb54d24c05d143b3a15bb;p=jalview.git recent rebuild of the JPred client from WSDL2Java --- diff --git a/src/ext/vamsas/JPredWS.java b/src/ext/vamsas/JPredWS.java index 6d7eae1..801bf86 100755 --- a/src/ext/vamsas/JPredWS.java +++ b/src/ext/vamsas/JPredWS.java @@ -2,7 +2,7 @@ * JPredWS.java * * This file was auto-generated from WSDL - * by the Apache Axis 1.2RC3 Feb 28, 2005 (10:15:14 EST) WSDL2Java emitter. + * by the Apache Axis 1.2RC2 Nov 16, 2004 (12:19:44 EST) WSDL2Java emitter. */ package ext.vamsas; diff --git a/src/ext/vamsas/JPredWSService.java b/src/ext/vamsas/JPredWSService.java index f6049ee..e1f8cbe 100755 --- a/src/ext/vamsas/JPredWSService.java +++ b/src/ext/vamsas/JPredWSService.java @@ -2,7 +2,7 @@ * JPredWSService.java * * This file was auto-generated from WSDL - * by the Apache Axis 1.2RC3 Feb 28, 2005 (10:15:14 EST) WSDL2Java emitter. + * by the Apache Axis 1.2RC2 Nov 16, 2004 (12:19:44 EST) WSDL2Java emitter. */ package ext.vamsas; diff --git a/src/ext/vamsas/JPredWSServiceLocator.java b/src/ext/vamsas/JPredWSServiceLocator.java index 05fcd5a..0faea4c 100755 --- a/src/ext/vamsas/JPredWSServiceLocator.java +++ b/src/ext/vamsas/JPredWSServiceLocator.java @@ -2,7 +2,7 @@ * JPredWSServiceLocator.java * * This file was auto-generated from WSDL - * by the Apache Axis 1.2RC3 Feb 28, 2005 (10:15:14 EST) WSDL2Java emitter. + * by the Apache Axis 1.2RC2 Nov 16, 2004 (12:19:44 EST) WSDL2Java emitter. */ package ext.vamsas; @@ -17,10 +17,6 @@ public class JPredWSServiceLocator extends org.apache.axis.client.Service implem super(config); } - public JPredWSServiceLocator(java.lang.String wsdlLoc, javax.xml.namespace.QName sName) throws javax.xml.rpc.ServiceException { - super(wsdlLoc, sName); - } - // Use to get a proxy class for jpred private java.lang.String jpred_address = "http://anaplog.compbio.dundee.ac.uk:8080/axis/services/jpred"; diff --git a/src/ext/vamsas/JpredResult.java b/src/ext/vamsas/JpredResult.java index c968231..d798def 100755 --- a/src/ext/vamsas/JpredResult.java +++ b/src/ext/vamsas/JpredResult.java @@ -2,7 +2,7 @@ * JpredResult.java * * This file was auto-generated from WSDL - * by the Apache Axis 1.2RC3 Feb 28, 2005 (10:15:14 EST) WSDL2Java emitter. + * by the Apache Axis 1.2RC2 Nov 16, 2004 (12:19:44 EST) WSDL2Java emitter. */ package ext.vamsas; @@ -110,13 +110,11 @@ public class JpredResult extends ext.vamsas.Result implements java.io.Serializ elemField.setFieldName("aligfile"); elemField.setXmlName(new javax.xml.namespace.QName("http://dataTypes.vamsas", "aligfile")); elemField.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string")); - elemField.setNillable(true); typeDesc.addFieldDesc(elemField); elemField = new org.apache.axis.description.ElementDesc(); elemField.setFieldName("predfile"); elemField.setXmlName(new javax.xml.namespace.QName("http://dataTypes.vamsas", "predfile")); elemField.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string")); - elemField.setNillable(true); typeDesc.addFieldDesc(elemField); } diff --git a/src/ext/vamsas/JpredSoapBindingStub.java b/src/ext/vamsas/JpredSoapBindingStub.java index e97ed2a..f11fbe3 100755 --- a/src/ext/vamsas/JpredSoapBindingStub.java +++ b/src/ext/vamsas/JpredSoapBindingStub.java @@ -2,7 +2,7 @@ * JpredSoapBindingStub.java * * This file was auto-generated from WSDL - * by the Apache Axis 1.2RC3 Feb 28, 2005 (10:15:14 EST) WSDL2Java emitter. + * by the Apache Axis 1.2RC2 Nov 16, 2004 (12:19:44 EST) WSDL2Java emitter. */ package ext.vamsas; @@ -79,7 +79,6 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub implements } else { super.service = service; } - ((org.apache.axis.client.Service)super.service).setTypeMappingVersion("1.2"); java.lang.Class cls; javax.xml.namespace.QName qName; java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class; @@ -92,9 +91,9 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub implements java.lang.Class simpledf = org.apache.axis.encoding.ser.SimpleDeserializerFactory.class; java.lang.Class simplelistsf = org.apache.axis.encoding.ser.SimpleListSerializerFactory.class; java.lang.Class simplelistdf = org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class; - qName = new javax.xml.namespace.QName("http://dataTypes.vamsas", "Msfalignment"); + qName = new javax.xml.namespace.QName("http://dataTypes.vamsas", "Sequence"); cachedSerQNames.add(qName); - cls = ext.vamsas.Msfalignment.class; + cls = ext.vamsas.Sequence.class; cachedSerClasses.add(cls); cachedSerFactories.add(beansf); cachedDeserFactories.add(beandf); @@ -106,23 +105,23 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub implements cachedSerFactories.add(beansf); cachedDeserFactories.add(beandf); - qName = new javax.xml.namespace.QName("http://dataTypes.vamsas", "JpredResult"); + qName = new javax.xml.namespace.QName("http://dataTypes.vamsas", "Msfalignment"); cachedSerQNames.add(qName); - cls = ext.vamsas.JpredResult.class; + cls = ext.vamsas.Msfalignment.class; cachedSerClasses.add(cls); cachedSerFactories.add(beansf); cachedDeserFactories.add(beandf); - qName = new javax.xml.namespace.QName("http://dataTypes.vamsas", "Result"); + qName = new javax.xml.namespace.QName("http://dataTypes.vamsas", "JpredResult"); cachedSerQNames.add(qName); - cls = ext.vamsas.Result.class; + cls = ext.vamsas.JpredResult.class; cachedSerClasses.add(cls); cachedSerFactories.add(beansf); cachedDeserFactories.add(beandf); - qName = new javax.xml.namespace.QName("http://dataTypes.vamsas", "Sequence"); + qName = new javax.xml.namespace.QName("http://dataTypes.vamsas", "Result"); cachedSerQNames.add(qName); - cls = ext.vamsas.Sequence.class; + cls = ext.vamsas.Result.class; cachedSerClasses.add(cls); cachedSerFactories.add(beansf); cachedDeserFactories.add(beandf); @@ -169,21 +168,11 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub implements java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i); javax.xml.namespace.QName qName = (javax.xml.namespace.QName) cachedSerQNames.get(i); - java.lang.Object x = cachedSerFactories.get(i); - if (x instanceof Class) { - java.lang.Class sf = (java.lang.Class) + java.lang.Class sf = (java.lang.Class) cachedSerFactories.get(i); - java.lang.Class df = (java.lang.Class) + java.lang.Class df = (java.lang.Class) cachedDeserFactories.get(i); - _call.registerTypeMapping(cls, qName, sf, df, false); - } - else if (x instanceof javax.xml.rpc.encoding.SerializerFactory) { - org.apache.axis.encoding.SerializerFactory sf = (org.apache.axis.encoding.SerializerFactory) - cachedSerFactories.get(i); - org.apache.axis.encoding.DeserializerFactory df = (org.apache.axis.encoding.DeserializerFactory) - cachedDeserFactories.get(i); - _call.registerTypeMapping(cls, qName, sf, df, false); - } + _call.registerTypeMapping(cls, qName, sf, df, false); } } } @@ -210,7 +199,7 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub implements setRequestHeaders(_call); setAttachments(_call); - try { java.lang.Object _resp = _call.invoke(new java.lang.Object[] {in0}); + java.lang.Object _resp = _call.invoke(new java.lang.Object[] {in0}); if (_resp instanceof java.rmi.RemoteException) { throw (java.rmi.RemoteException)_resp; @@ -223,9 +212,6 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub implements return (java.lang.String) org.apache.axis.utils.JavaUtils.convert(_resp, java.lang.String.class); } } - } catch (org.apache.axis.AxisFault axisFaultException) { - throw axisFaultException; -} } public java.lang.String predictOnMsa(ext.vamsas.Msfalignment in0) throws java.rmi.RemoteException { @@ -244,7 +230,7 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub implements setRequestHeaders(_call); setAttachments(_call); - try { java.lang.Object _resp = _call.invoke(new java.lang.Object[] {in0}); + java.lang.Object _resp = _call.invoke(new java.lang.Object[] {in0}); if (_resp instanceof java.rmi.RemoteException) { throw (java.rmi.RemoteException)_resp; @@ -257,9 +243,6 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub implements return (java.lang.String) org.apache.axis.utils.JavaUtils.convert(_resp, java.lang.String.class); } } - } catch (org.apache.axis.AxisFault axisFaultException) { - throw axisFaultException; -} } public ext.vamsas.Secstructpred getpredict(java.lang.String in0) throws java.rmi.RemoteException { @@ -278,7 +261,7 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub implements setRequestHeaders(_call); setAttachments(_call); - try { java.lang.Object _resp = _call.invoke(new java.lang.Object[] {in0}); + java.lang.Object _resp = _call.invoke(new java.lang.Object[] {in0}); if (_resp instanceof java.rmi.RemoteException) { throw (java.rmi.RemoteException)_resp; @@ -291,9 +274,6 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub implements return (ext.vamsas.Secstructpred) org.apache.axis.utils.JavaUtils.convert(_resp, ext.vamsas.Secstructpred.class); } } - } catch (org.apache.axis.AxisFault axisFaultException) { - throw axisFaultException; -} } public ext.vamsas.JpredResult getresult(java.lang.String in0) throws java.rmi.RemoteException { @@ -312,7 +292,7 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub implements setRequestHeaders(_call); setAttachments(_call); - try { java.lang.Object _resp = _call.invoke(new java.lang.Object[] {in0}); + java.lang.Object _resp = _call.invoke(new java.lang.Object[] {in0}); if (_resp instanceof java.rmi.RemoteException) { throw (java.rmi.RemoteException)_resp; @@ -325,9 +305,6 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub implements return (ext.vamsas.JpredResult) org.apache.axis.utils.JavaUtils.convert(_resp, ext.vamsas.JpredResult.class); } } - } catch (org.apache.axis.AxisFault axisFaultException) { - throw axisFaultException; -} } } diff --git a/src/ext/vamsas/Msfalignment.java b/src/ext/vamsas/Msfalignment.java index ff8aac1..70ed612 100755 --- a/src/ext/vamsas/Msfalignment.java +++ b/src/ext/vamsas/Msfalignment.java @@ -2,7 +2,7 @@ * Msfalignment.java * * This file was auto-generated from WSDL - * by the Apache Axis 1.2RC3 Feb 28, 2005 (10:15:14 EST) WSDL2Java emitter. + * by the Apache Axis 1.2RC2 Nov 16, 2004 (12:19:44 EST) WSDL2Java emitter. */ package ext.vamsas; @@ -110,13 +110,11 @@ public class Msfalignment implements java.io.Serializable { elemField.setFieldName("msf"); elemField.setXmlName(new javax.xml.namespace.QName("http://dataTypes.vamsas", "msf")); elemField.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string")); - elemField.setNillable(true); typeDesc.addFieldDesc(elemField); elemField = new org.apache.axis.description.ElementDesc(); elemField.setFieldName("notes"); elemField.setXmlName(new javax.xml.namespace.QName("http://dataTypes.vamsas", "notes")); elemField.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string")); - elemField.setNillable(true); typeDesc.addFieldDesc(elemField); } diff --git a/src/ext/vamsas/Result.java b/src/ext/vamsas/Result.java index ef8b790..a2da004 100755 --- a/src/ext/vamsas/Result.java +++ b/src/ext/vamsas/Result.java @@ -2,7 +2,7 @@ * Result.java * * This file was auto-generated from WSDL - * by the Apache Axis 1.2RC3 Feb 28, 2005 (10:15:14 EST) WSDL2Java emitter. + * by the Apache Axis 1.2RC2 Nov 16, 2004 (12:19:44 EST) WSDL2Java emitter. */ package ext.vamsas; @@ -376,7 +376,6 @@ public class Result implements java.io.Serializable { elemField.setFieldName("status"); elemField.setXmlName(new javax.xml.namespace.QName("http://dataTypes.vamsas", "status")); elemField.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string")); - elemField.setNillable(true); typeDesc.addFieldDesc(elemField); elemField = new org.apache.axis.description.ElementDesc(); elemField.setFieldName("suspended"); diff --git a/src/ext/vamsas/Secstructpred.java b/src/ext/vamsas/Secstructpred.java index e30edeb..777b41f 100755 --- a/src/ext/vamsas/Secstructpred.java +++ b/src/ext/vamsas/Secstructpred.java @@ -2,7 +2,7 @@ * Secstructpred.java * * This file was auto-generated from WSDL - * by the Apache Axis 1.2RC3 Feb 28, 2005 (10:15:14 EST) WSDL2Java emitter. + * by the Apache Axis 1.2RC2 Nov 16, 2004 (12:19:44 EST) WSDL2Java emitter. */ package ext.vamsas; @@ -81,7 +81,6 @@ public class Secstructpred implements java.io.Serializable { elemField.setFieldName("output"); elemField.setXmlName(new javax.xml.namespace.QName("http://dataTypes.vamsas", "output")); elemField.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string")); - elemField.setNillable(true); typeDesc.addFieldDesc(elemField); } diff --git a/src/ext/vamsas/Sequence.java b/src/ext/vamsas/Sequence.java index 1fc4be7..7d2d730 100755 --- a/src/ext/vamsas/Sequence.java +++ b/src/ext/vamsas/Sequence.java @@ -2,7 +2,7 @@ * Sequence.java * * This file was auto-generated from WSDL - * by the Apache Axis 1.2RC3 Feb 28, 2005 (10:15:14 EST) WSDL2Java emitter. + * by the Apache Axis 1.2RC2 Nov 16, 2004 (12:19:44 EST) WSDL2Java emitter. */ package ext.vamsas; @@ -110,13 +110,11 @@ public class Sequence implements java.io.Serializable { elemField.setFieldName("id"); elemField.setXmlName(new javax.xml.namespace.QName("http://dataTypes.vamsas", "id")); elemField.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string")); - elemField.setNillable(true); typeDesc.addFieldDesc(elemField); elemField = new org.apache.axis.description.ElementDesc(); elemField.setFieldName("seq"); elemField.setXmlName(new javax.xml.namespace.QName("http://dataTypes.vamsas", "seq")); elemField.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string")); - elemField.setNillable(true); typeDesc.addFieldDesc(elemField); }