From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Tue, 3 Feb 2015 11:13:19 +0000 (+0000)
Subject: Comments added
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=d6b7c22da593c31a31a4c466b746a0a3e2f6ca02;p=jalview.git

Comments added
---

diff --git a/test/jalview/datamodel/AlignedCodonFrameTest.java b/test/jalview/datamodel/AlignedCodonFrameTest.java
index e782cef..9694a3e 100644
--- a/test/jalview/datamodel/AlignedCodonFrameTest.java
+++ b/test/jalview/datamodel/AlignedCodonFrameTest.java
@@ -76,10 +76,16 @@ public class AlignedCodonFrameTest
     final Sequence aseq2 = new Sequence("Seq2", "-LY-");
     aseq2.createDatasetSequence();
 
+    /*
+     * First with no mappings
+     */
     AlignedCodonFrame acf = new AlignedCodonFrame();
 
     assertNull(acf.getMappedRegion(seq1, aseq1, 1));
 
+    /*
+     * Set up the mappings for the exons (upper-case bases)
+     */
     MapList map = new MapList(new int[]
     { 2, 4, 6, 6, 8, 9 }, new int[]
     { 1, 2 }, 3, 1);
@@ -98,6 +104,9 @@ public class AlignedCodonFrameTest
     assertEquals("[5, 5, 7, 8]",
             Arrays.toString(acf.getMappedRegion(seq2, aseq2, 2)));
 
+    /*
+     * No mapping from sequence 1 to sequence 2
+     */
     assertNull(acf.getMappedRegion(seq1, aseq2, 1));
   }
 }