From: cmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Date: Wed, 9 Mar 2011 01:20:33 +0000 (+0000)
Subject: Edited wiki page PhyloBioRuby through web user interface.
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=d7341dba193010ca83218405e7ea76e38e473ab9;p=jalview.git

Edited wiki page PhyloBioRuby through web user interface.
---

diff --git a/wiki/PhyloBioRuby.wiki b/wiki/PhyloBioRuby.wiki
index 0a9f1b6..e2f013d 100644
--- a/wiki/PhyloBioRuby.wiki
+++ b/wiki/PhyloBioRuby.wiki
@@ -63,14 +63,14 @@ end
 
 ==== Setting the Output Format ====
 
-The following symbols determine the output format.
+The following symbols determine the output format:
 
-  * ClustalW: `:clustal`
-  * FASTA:    `:fasta`
-  * PHYLIP interleaved (will truncate sequence names to no more than 10 characters): `:phylip`
-  * PHYLIP non-interleaved (will truncate sequence names to no more than 10 characters): `:phylipnon`
-  * MSF: `:msf`
-  * Molphy: `:molphy`
+  * `:clustal` for ClustalW
+  * `:fasta` for FASTA
+  * `:phylip`for PHYLIP interleaved (will truncate sequence names to no more than 10 characters)
+  * `:phylipnon` for PHYLIP non-interleaved (will truncate sequence names to no more than 10 characters)
+  * `:msf` for MSF
+  * `:molphy` for Molphy
 
 
 For example, the following writes in PHYLIP's non-interleaved format:
@@ -97,8 +97,8 @@ For Bio::!FlatFile entries:
 entry.to_biosequence.output(:genbank)
 }}}
 
-Constants for available formats are:
-  * Genbank :genbank
+The following symbols determine the output format.
+  *`:genbank` for Genbank
 
 
 == Calculating Multiple Sequence Alignments ==