From: jprocter <Jim Procter>
Date: Thu, 11 Mar 2010 17:04:54 +0000 (+0000)
Subject: raise a warning if column annotation gets truncated.
X-Git-Tag: Release_2_5~136
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=d7f018c09e7831fad82d6c3b268a45a3854658ef;p=jalview.git

raise a warning if column annotation gets truncated.
---

diff --git a/src/jalview/io/AMSAFile.java b/src/jalview/io/AMSAFile.java
index 20cf745..1fcda43 100644
--- a/src/jalview/io/AMSAFile.java
+++ b/src/jalview/io/AMSAFile.java
@@ -86,7 +86,11 @@ public class AMSAFile extends jalview.io.FastaFile
             {
               ch = aa.annotations[k].displayCharacter;
             }
-
+            if (ch.length()>1)
+            {
+              this.warningMessage="Truncated column annotation to first letter.";
+              ch = ch.substring(0,1);
+            }
             out.append(ch);
 
           }