From: Charles Ofoegbu Date: Tue, 20 Jan 2015 17:25:35 +0000 (+0000) Subject: clean up X-Git-Tag: Jalview_2_9~113 X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=d8c0411d0b6ba5c5f6d9bcd0c12b6ffa2dea09ee;p=jalview.git clean up --- diff --git a/src/jalview/api/analysis/AnnotationFilterParameter.java b/src/jalview/api/analysis/AnnotationFilterParameter.java deleted file mode 100644 index c649972..0000000 --- a/src/jalview/api/analysis/AnnotationFilterParameter.java +++ /dev/null @@ -1,101 +0,0 @@ -package jalview.api.analysis; - -import java.util.ArrayList; -import java.util.List; - -public class AnnotationFilterParameter -{ - public enum ThresholdType - { - NO_THRESHOLD, BELOW_THRESHOLD, ABOVE_THRESHOLD; - } - - public enum SearchableAnnotationField - { - DISPLAY_STRING, DESCRIPTION; - } - private ThresholdType thresholdType; - - private float thresholdValue; - - private boolean filterAlphaHelix = false; - - private boolean filterBetaSheet = false; - - private boolean filterTurn = false; - - private String regexString; - - private List regexSearchFields = new ArrayList(); - - public ThresholdType getThresholdType() - { - return thresholdType; - } - - public void setThresholdType(ThresholdType thresholdType) - { - this.thresholdType = thresholdType; - } - - public float getThresholdValue() - { - return thresholdValue; - } - - public void setThresholdValue(float thresholdValue) - { - this.thresholdValue = thresholdValue; - } - - public String getRegexString() - { - return regexString; - } - - public void setRegexString(String regexString) - { - this.regexString = regexString; - } - - public List getRegexSearchFields() - { - return regexSearchFields; - } - - public void addRegexSearchField(SearchableAnnotationField regexSearchField) - { - this.regexSearchFields.add(regexSearchField); - } - - public boolean isFilterAlphaHelix() - { - return filterAlphaHelix; - } - - public void setFilterAlphaHelix(boolean alphaHelix) - { - this.filterAlphaHelix = alphaHelix; - } - - public boolean isFilterBetaSheet() - { - return filterBetaSheet; - } - - public void setFilterBetaSheet(boolean betaSheet) - { - this.filterBetaSheet = betaSheet; - } - - public boolean isFilterTurn() - { - return filterTurn; - } - - public void setFilterTurn(boolean turn) - { - this.filterTurn = turn; - } - -} diff --git a/utils/getJavaVersion.class b/utils/getJavaVersion.class new file mode 100644 index 0000000..0865915 Binary files /dev/null and b/utils/getJavaVersion.class differ