From: Charles Ofoegbu <tcnofoegbu@dundee.ac.uk>
Date: Tue, 20 Jan 2015 17:25:35 +0000 (+0000)
Subject: clean up
X-Git-Tag: Jalview_2_9~113
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=d8c0411d0b6ba5c5f6d9bcd0c12b6ffa2dea09ee;p=jalview.git

clean up
---

diff --git a/src/jalview/api/analysis/AnnotationFilterParameter.java b/src/jalview/api/analysis/AnnotationFilterParameter.java
deleted file mode 100644
index c649972..0000000
--- a/src/jalview/api/analysis/AnnotationFilterParameter.java
+++ /dev/null
@@ -1,101 +0,0 @@
-package jalview.api.analysis;
-
-import java.util.ArrayList;
-import java.util.List;
-
-public class AnnotationFilterParameter
-{
-  public enum ThresholdType
-  {
-    NO_THRESHOLD, BELOW_THRESHOLD, ABOVE_THRESHOLD;
-  }
-
-  public enum SearchableAnnotationField
-  {
-    DISPLAY_STRING, DESCRIPTION;
-  }
-  private ThresholdType thresholdType;
-
-  private float thresholdValue;
-
-  private boolean filterAlphaHelix = false;
-
-  private boolean filterBetaSheet = false;
-
-  private boolean filterTurn = false;
-
-  private String regexString;
-
-  private List<SearchableAnnotationField> regexSearchFields = new ArrayList<SearchableAnnotationField>();
-
-  public ThresholdType getThresholdType()
-  {
-    return thresholdType;
-  }
-
-  public void setThresholdType(ThresholdType thresholdType)
-  {
-    this.thresholdType = thresholdType;
-  }
-
-  public float getThresholdValue()
-  {
-    return thresholdValue;
-  }
-
-  public void setThresholdValue(float thresholdValue)
-  {
-    this.thresholdValue = thresholdValue;
-  }
-
-  public String getRegexString()
-  {
-    return regexString;
-  }
-
-  public void setRegexString(String regexString)
-  {
-    this.regexString = regexString;
-  }
-
-  public List<SearchableAnnotationField> getRegexSearchFields()
-  {
-    return regexSearchFields;
-  }
-
-  public void addRegexSearchField(SearchableAnnotationField regexSearchField)
-  {
-    this.regexSearchFields.add(regexSearchField);
-  }
-
-  public boolean isFilterAlphaHelix()
-  {
-    return filterAlphaHelix;
-  }
-
-  public void setFilterAlphaHelix(boolean alphaHelix)
-  {
-    this.filterAlphaHelix = alphaHelix;
-  }
-
-  public boolean isFilterBetaSheet()
-  {
-    return filterBetaSheet;
-  }
-
-  public void setFilterBetaSheet(boolean betaSheet)
-  {
-    this.filterBetaSheet = betaSheet;
-  }
-
-  public boolean isFilterTurn()
-  {
-    return filterTurn;
-  }
-
-  public void setFilterTurn(boolean turn)
-  {
-    this.filterTurn = turn;
-  }
-
-}
diff --git a/utils/getJavaVersion.class b/utils/getJavaVersion.class
new file mode 100644
index 0000000..0865915
Binary files /dev/null and b/utils/getJavaVersion.class differ