From: amwaterhouse <Andrew Waterhouse>
Date: Wed, 15 Feb 2006 15:24:07 +0000 (+0000)
Subject: Keeps up to date with featureRenderer
X-Git-Tag: Root_VamJalview_2_07b+~132
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=d8cdb85d0e0006bc5c3381423ec7be2dd8815755;p=jalview.git

Keeps up to date with featureRenderer
---

diff --git a/src/jalview/gui/OverviewPanel.java b/src/jalview/gui/OverviewPanel.java
index e20084c..baec46b 100755
--- a/src/jalview/gui/OverviewPanel.java
+++ b/src/jalview/gui/OverviewPanel.java
@@ -66,7 +66,7 @@ public class OverviewPanel extends JPanel implements Runnable
         sr = new SequenceRenderer(av);
         sr.renderGaps( false );
         fr = new FeatureRenderer(av);
-        fr.transparency = ap.seqPanel.seqCanvas.getFeatureRenderer().transparency;
+
 
         // scale the initial size of overviewpanel to shape of alignment
         float initialScale = (float) av.alignment.getWidth() / (float) av.alignment.getHeight();
@@ -243,6 +243,15 @@ public class OverviewPanel extends JPanel implements Runnable
     {
         miniMe = null;
 
+       if (av.showSequenceFeatures)
+       {
+         fr.featuresDisplayed = ap.seqPanel.seqCanvas.getFeatureRenderer().
+             featuresDisplayed;
+         //fr.featureGroups = ap.seqPanel.seqCanvas.getFeatureRenderer().featureGroups;
+         fr.featureColours = ap.seqPanel.seqCanvas.getFeatureRenderer().featureColours;
+         fr.transparency = ap.seqPanel.seqCanvas.getFeatureRenderer().transparency;
+       }
+
         int alwidth = av.alignment.getWidth();
         int alheight = av.alignment.getHeight();