From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Thu, 10 May 2012 15:04:35 +0000 (+0100)
Subject: formatting
X-Git-Tag: Jalview_2_9~532^2~13
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=d8fc47d6101df1c71674b2635bb2cadc11a7136c;p=jalview.git

formatting
---

diff --git a/src/jalview/ws/dbsources/das/datamodel/DasSequenceSource.java b/src/jalview/ws/dbsources/das/datamodel/DasSequenceSource.java
index 3883245..4a7b4bd 100644
--- a/src/jalview/ws/dbsources/das/datamodel/DasSequenceSource.java
+++ b/src/jalview/ws/dbsources/das/datamodel/DasSequenceSource.java
@@ -122,7 +122,6 @@ public class DasSequenceSource extends DbSourceProxyImpl implements
     return coordsys.getVersion();
   }
 
-
   public AlignmentI getSequenceRecords(String queries) throws Exception
   {
     StringTokenizer st = new StringTokenizer(queries, "\t");
@@ -211,7 +210,7 @@ public class DasSequenceSource extends DbSourceProxyImpl implements
     }
     else
     {
-      Vector<SequenceI> seqs=null;
+      Vector<SequenceI> seqs = null;
       for (Map.Entry<String, Map<List<String>, DasSequenceAdapter>> resset : resultset
               .entrySet())
       {
@@ -241,14 +240,15 @@ public class DasSequenceSource extends DbSourceProxyImpl implements
                                   + lbl
                                   + ") from "
                                   + resset.getKey()
-                                  + " (source is "
-                                  + getDbName());
+                                  + " (source is " + getDbName());
                   continue;
                 }
               }
               seqs = new java.util.Vector<SequenceI>();
-              // JDAS returns a sequence complete with any newlines and spaces in the XML
-              Sequence sq = new Sequence(lbl, e.getContent().replaceAll("\\s+", ""));
+              // JDAS returns a sequence complete with any newlines and spaces
+              // in the XML
+              Sequence sq = new Sequence(lbl, e.getContent().replaceAll(
+                      "\\s+", ""));
               sq.addDBRef(new DBRefEntry(getDbSource(), getDbVersion()
                       + ":" + e.getVersion(), lbl));
               seqs.addElement(sq);
@@ -269,12 +269,15 @@ public class DasSequenceSource extends DbSourceProxyImpl implements
       {
         java.util.Vector<jalviewSourceI> srcs = new java.util.Vector<jalviewSourceI>();
         srcs.addElement(jsrc);
-        try {
+        try
+        {
           new jalview.ws.DasSequenceFeatureFetcher(sqs, null, srcs, false,
-                false);
+                  false);
         } catch (Exception x)
         {
-          Cache.log.error("Couldn't retrieve features for sequence from its source.",x);
+          Cache.log
+                  .error("Couldn't retrieve features for sequence from its source.",
+                          x);
         }
       }