From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Fri, 18 Jan 2013 15:55:32 +0000 (+0000)
Subject: JAL-1238 method to test if DAS source is a primary reference source
X-Git-Tag: Jalview_2_9~253^2~2
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=d96dccc4447e64d0fae5f5e8c77ba79737ba0bb1;p=jalview.git

JAL-1238 method to test if DAS source is a primary reference source
---

diff --git a/src/jalview/ws/dbsources/das/api/jalviewSourceI.java b/src/jalview/ws/dbsources/das/api/jalviewSourceI.java
index 1511e6b..308bc21 100644
--- a/src/jalview/ws/dbsources/das/api/jalviewSourceI.java
+++ b/src/jalview/ws/dbsources/das/api/jalviewSourceI.java
@@ -74,4 +74,10 @@ public interface jalviewSourceI
    */
   boolean isNewerThan(jalviewSourceI jalviewSourceI);
 
+  /**
+   * test if the source is a reference source for the authority
+   * @return
+   */
+  boolean isReferenceSource();
+
 }
diff --git a/src/jalview/ws/dbsources/das/datamodel/DasSequenceSource.java b/src/jalview/ws/dbsources/das/datamodel/DasSequenceSource.java
index 7bb6436..9650b8c 100644
--- a/src/jalview/ws/dbsources/das/datamodel/DasSequenceSource.java
+++ b/src/jalview/ws/dbsources/das/datamodel/DasSequenceSource.java
@@ -99,6 +99,7 @@ public class DasSequenceSource extends DbSourceProxyImpl implements
       throw new Exception("Source " + source.getTitle()
               + " does not support the sequence command.");
     }
+    this.tier = 1+((jsrc.isLocal() || jsrc.isReferenceSource()) ? 0 : 1);
     this.source = source;
     this.dbname = dbname;
     this.dbrefname = dbrefname.toUpperCase();