From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Tue, 5 Sep 2006 09:50:42 +0000 (+0000)
Subject: enum constants for Glyph types.
X-Git-Tag: Release_0.2~285
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=db98ee02807c38b65ad2585237fc379b335fb0ee;p=vamsas.git

enum constants for Glyph types.


git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@235 be28352e-c001-0410-b1a7-c7978e42abec
---

diff --git a/src/org/vamsas/objects/utils/GlyphDictionary.java b/src/org/vamsas/objects/utils/GlyphDictionary.java
new file mode 100644
index 0000000..1ed7b20
--- /dev/null
+++ b/src/org/vamsas/objects/utils/GlyphDictionary.java
@@ -0,0 +1,23 @@
+package org.vamsas.objects.utils;
+
+/**
+ * dict attribute values for glyph symbol sets found in org.vamsas.objects.core.AnnotationElement
+ * TODO: add validators and multilength symbols.
+ * @author JimP
+ *
+ */
+public class GlyphDictionary {
+  /**
+   * standard H, E, or C three state secondary structure assignment.
+   */
+  static final public String PROTEIN_SS_3STATE="aasecstr_3"; // HE, blank or C
+  /**
+   * default glyph type attribute indicates a UTF8 character
+   */
+  static final public String DEFAULT="utf8";
+  /**
+   * kyte and doolittle hydrophobicity
+   * TODO: specify this glyph set.
+   */
+  static final public String PROTEIN_HD_HYDRO="kd_hydrophobicity";
+}