From: Daniel Luke Barton <dbarton@ubuntu.(none)>
Date: Thu, 29 Aug 2013 15:33:46 +0000 (+0100)
Subject: conf/Executable.properties and compilebin.sh updated for linux.
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=dc47015a9863a72d862dc9a6f7a4df7d8e5dfb62;p=jabaws.git

conf/Executable.properties and compilebin.sh updated for linux.
---

diff --git a/binaries/src/compilebin.sh b/binaries/src/compilebin.sh
old mode 100644
new mode 100755
index 441cdb0..87ce823
--- a/binaries/src/compilebin.sh
+++ b/binaries/src/compilebin.sh
@@ -84,3 +84,12 @@ make
 echo "DONE"
 cd ..
 
+echo "Compiling Vienna ..."
+cd ViennaRNA
+chmod +x ./configure
+./configure
+make clean
+make
+echo "DONE"
+cd ..
+
diff --git a/conf/Executable.properties b/conf/Executable.properties
index 9641fb9..333477e 100644
--- a/conf/Executable.properties
+++ b/conf/Executable.properties
@@ -197,7 +197,7 @@ aacon.presets.file=conf/settings/AAConPresets.xml
 #aacon.cluster.settings=-q 64bit-pri.q -pe smp 4 -l ram=1700M -l h_cpu=24:00:00
 
 #####					RNAALIFOLD CONFIGURATION			 ######
-# just the windows binary at the moment
 local.rnaalifold.bin.windows=binaries/windows/ViennaRNA/RNAalifold.exe
+local.rnaalifold.bin=binaries/src/ViennaRNA/Progs/RNAalifold
 rnaalifold.parameters.file=conf/settings/RNAalifoldParameters.xml