From: gmungoc Date: Tue, 22 Dec 2015 09:21:58 +0000 (+0000) Subject: JAL-653 encapsulate Strand, Attributes, Status of SequenceFeature X-Git-Tag: Release_2_10_0~296^2~101 X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=dca6cae2420c56309217a921365466c2371b1b0b;p=jalview.git JAL-653 encapsulate Strand, Attributes, Status of SequenceFeature --- diff --git a/src/jalview/datamodel/SequenceFeature.java b/src/jalview/datamodel/SequenceFeature.java index e60e0c8..6f514f7 100755 --- a/src/jalview/datamodel/SequenceFeature.java +++ b/src/jalview/datamodel/SequenceFeature.java @@ -32,6 +32,12 @@ import java.util.Vector; */ public class SequenceFeature { + private static final String STATUS = "status"; + + private static final String STRAND = "STRAND"; + + private static final String ATTRIBUTES = "ATTRIBUTES"; + public int begin; public int end; @@ -107,7 +113,7 @@ public class SequenceFeature { this.type = type; this.description = desc; - setValue("status", status); + setValue(STATUS, status); this.begin = begin; this.end = end; this.featureGroup = featureGroup; @@ -291,20 +297,22 @@ public class SequenceFeature */ public void setStatus(String status) { - setValue("status", status); + setValue(STATUS, status); } public String getStatus() { - if (otherDetails != null) - { - String stat = (String) otherDetails.get("status"); - if (stat != null) - { - return new String(stat); - } - } - return null; + return (String) getValue(STATUS); + } + + public void setAttributes(String attr) + { + setValue(ATTRIBUTES, attr); + } + + public String getAttributes() + { + return (String) getValue(ATTRIBUTES); } public void setPosition(int pos) @@ -329,7 +337,7 @@ public class SequenceFeature int strand = 0; if (otherDetails != null) { - Object str = otherDetails.get("STRAND"); + Object str = otherDetails.get(STRAND); if ("-".equals(str)) { strand = -1; @@ -342,4 +350,9 @@ public class SequenceFeature return strand; } + public void setStrand(String strand) + { + setValue(STRAND, strand); + } + }