From: Jim Procter <jprocter@dundee.ac.uk>
Date: Tue, 17 Mar 2015 15:56:33 +0000 (+0000)
Subject: JAL-1617 fake xref database for when Uniprot xrefs aren't added
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=dd7a7e074f660da5f4af0eddb1d5f2388720a263;p=jalview.git

JAL-1617 fake xref database for when Uniprot xrefs aren't added
---

diff --git a/src/jalview/datamodel/DBRefSource.java b/src/jalview/datamodel/DBRefSource.java
index b1824f7..6982594 100755
--- a/src/jalview/datamodel/DBRefSource.java
+++ b/src/jalview/datamodel/DBRefSource.java
@@ -38,12 +38,15 @@ public class DBRefSource
   /**
    * UNIPROT Entry Name
    */
-  public static String UP_NAME = "UNIPROT_NAME";
+  public static String UP_NAME = "UNIPROT_NAME".toUpperCase();
 
   /**
    * Uniprot Knowledgebase/TrEMBL as served from EMBL protein products.
    */
-  public static final String UNIPROTKB = "UniProtKB/TrEMBL";
+  public static final String UNIPROTKB = "UniProtKB/TrEMBL".toUpperCase();
+  
+  public static final String EMBLCDSProduct = "EMBLCDSProtein"
+          .toUpperCase();
 
   /**
    * PDB Entry Code
@@ -73,7 +76,7 @@ public class DBRefSource
   /**
    * GeneDB ID
    */
-  public static final String GENEDB = "GeneDB";
+  public static final String GENEDB = "GeneDB".toUpperCase();
 
   /**
    * List of databases whose sequences might have coding regions annotated
@@ -85,10 +88,10 @@ public class DBRefSource
   { EMBLCDS, GENEDB };
 
   public static final String[] PROTEINDBS =
-  { UNIPROT, PDB, UNIPROTKB };
+  { UNIPROT, PDB, UNIPROTKB, EMBLCDSProduct };
 
   public static final String[] PROTEINSEQ =
-  { UNIPROT, UNIPROTKB };
+  { UNIPROT, UNIPROTKB, EMBLCDSProduct };
 
   public static final String[] PROTEINSTR =
   { PDB };