From: kjvdheide <kjvanderheide@dundee.ac.uk>
Date: Sat, 7 Oct 2017 22:10:32 +0000 (+0100)
Subject: Renaming
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=dd947b10a8f81eca40c6c2cb3bf588d802c16f5e;p=jalview.git

Renaming
---

diff --git a/src/jalview/ext/archaeopteryx/ArchaeopteryxInit.java b/src/jalview/ext/archaeopteryx/ArchaeopteryxNewickInit.java
similarity index 94%
rename from src/jalview/ext/archaeopteryx/ArchaeopteryxInit.java
rename to src/jalview/ext/archaeopteryx/ArchaeopteryxNewickInit.java
index 04147ce..eb4af6f 100644
--- a/src/jalview/ext/archaeopteryx/ArchaeopteryxInit.java
+++ b/src/jalview/ext/archaeopteryx/ArchaeopteryxNewickInit.java
@@ -30,7 +30,7 @@ import java.io.PrintWriter;
 
 import org.forester.archaeopteryx.Archaeopteryx;
 
-public class ArchaeopteryxInit
+public class ArchaeopteryxNewickInit
 {
   private String filePath = "/tmp/jalviewtree.nwk";
 
@@ -38,13 +38,13 @@ public class ArchaeopteryxInit
 
   private NewickFile newickTree;
 
-  public ArchaeopteryxInit(TreeModel jalviewTreeModel)
+  public ArchaeopteryxNewickInit(TreeModel jalviewTreeModel)
   {
     this.tree = jalviewTreeModel;
     this.newickTree = treeToNewick(tree);
   }
 
-  public ArchaeopteryxInit(NewickFile newickTreeModel)
+  public ArchaeopteryxNewickInit(NewickFile newickTreeModel)
   {
     this.newickTree = newickTreeModel;
   }
diff --git a/src/jalview/gui/TreePanel.java b/src/jalview/gui/TreePanel.java
index 366b97f..ed6eae0 100755
--- a/src/jalview/gui/TreePanel.java
+++ b/src/jalview/gui/TreePanel.java
@@ -41,7 +41,7 @@ import jalview.datamodel.NodeTransformI;
 import jalview.datamodel.SequenceFeature;
 import jalview.datamodel.SequenceI;
 import jalview.datamodel.SequenceNode;
-import jalview.ext.archaeopteryx.ArchaeopteryxInit;
+import jalview.ext.archaeopteryx.ArchaeopteryxNewickInit;
 import jalview.io.JalviewFileChooser;
 import jalview.io.JalviewFileView;
 import jalview.io.NewickFile;
@@ -294,7 +294,7 @@ public class TreePanel extends GTreePanel
 
 
       }
-      ArchaeopteryxInit archae = new ArchaeopteryxInit(tree);
+      ArchaeopteryxNewickInit archae = new ArchaeopteryxNewickInit(tree);
       archae.startArchaeopteryx();
 
       tree.reCount(tree.getTopNode());