From: amwaterhouse <Andrew Waterhouse>
Date: Tue, 6 Dec 2005 17:42:28 +0000 (+0000)
Subject: Allow for DNA alignments in imgMap
X-Git-Tag: Release_2_07~44
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=df7880a58e6b16d65f9ed8dbe4433efffbe8abec;p=jalview.git

Allow for DNA alignments in imgMap
---

diff --git a/src/jalview/gui/AlignmentPanel.java b/src/jalview/gui/AlignmentPanel.java
index e3bc620..af24c9f 100755
--- a/src/jalview/gui/AlignmentPanel.java
+++ b/src/jalview/gui/AlignmentPanel.java
@@ -921,9 +921,14 @@ public class AlignmentPanel extends GAlignmentPanel
           for(res =0; res<alwidth; res++)
           {
             text = new StringBuffer();
-            Object obj = ResidueProperties.aa2Triplet.get(
+            Object obj = null;
+            if(av.alignment.isNucleotide())
+              obj = ResidueProperties.nucleotideName.get(seq.getCharAt(res)+"" );
+            else
+              obj = ResidueProperties.aa2Triplet.get(
                     seq.getCharAt(res) + "");
-            if (obj == null)
+
+              if (obj == null)
                   continue;
 
             String triplet = obj.toString();