From: Jim Procter Date: Tue, 11 Sep 2018 13:03:50 +0000 (+0100) Subject: JAL-3111 drop hts-1.33 as a dependency (in favour of htsjdk-2.12) X-Git-Tag: Release_2_11_0~18^2 X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=df86a897c80aabab09e4fb3831b56b6a8d5c072d;p=jalview.git JAL-3111 drop hts-1.33 as a dependency (in favour of htsjdk-2.12) --- diff --git a/.classpath b/.classpath index ad1fa86..f4d788d 100644 --- a/.classpath +++ b/.classpath @@ -47,7 +47,6 @@ - diff --git a/THIRDPARTYLIBS b/THIRDPARTYLIBS index 40d0f6c..c7c9b5d 100644 --- a/THIRDPARTYLIBS +++ b/THIRDPARTYLIBS @@ -51,7 +51,7 @@ quaqua: v.8.0 (latest stable) by Randel S Hofer. LGPL and BSD Modified license: vaqua5-patch: This is a patched version of VAqua v5 (latest stable) by Alan Snyder et al. GPLv3 with Classpath exception, also includes contributions from Quaqua: http://violetlib.org/vaqua/overview.html - see doc/patching-vaqua.txt for patch details, and http://issues.jalview.org/browse/JAL-2988 for details of the bug that the patch addresses. -lib/htsjdk-1.120-SNAPSHOT.jar: (currently not required for 2.10) built from maven master at https://github.com/samtools/htsjdk MIT License to Broad Institute +lib/htsjdk-2.12.jar: built from maven master at https://github.com/samtools/htsjdk MIT License to Broad Institute lib/biojava-core-4.1.0.jar LGPLv2.1 - latest license at https://github.com/biojava/biojava/blob/master/LICENSE diff --git a/lib/htsjdk-1.133.jar b/lib/htsjdk-1.133.jar deleted file mode 100644 index f084258..0000000 Binary files a/lib/htsjdk-1.133.jar and /dev/null differ