From: Ben Soares <b.soares@dundee.ac.uk>
Date: Tue, 7 Jun 2022 13:14:53 +0000 (+0100)
Subject: JAL-4020 class formatting
X-Git-Tag: Release_2_11_2_6~52^2
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=dfc849311567b9764bf2984e22c683dc988ed5d7;p=jalview.git

JAL-4020 class formatting
---

diff --git a/src/jalview/ext/pymol/PymolManager.java b/src/jalview/ext/pymol/PymolManager.java
index e10fc9d..7dfdb0c 100644
--- a/src/jalview/ext/pymol/PymolManager.java
+++ b/src/jalview/ext/pymol/PymolManager.java
@@ -112,7 +112,8 @@ public class PymolManager
       {
         for (String path : new String[] { "Schrodinger\\PyMOL2", "PyMOL" })
         {
-          for (String binary : new String [] {"PyMOLWinWithConsole.bat", "Scripts\\pymol.exe", "PyMOLWin.exe"})
+          for (String binary : new String[] { "PyMOLWinWithConsole.bat",
+              "Scripts\\pymol.exe", "PyMOLWin.exe" })
           {
             pathList.add(String.format("%s\\%s\\%s", root, path, binary));
           }
@@ -271,15 +272,16 @@ public class PymolManager
         }
         List<String> args = new ArrayList<>();
         args.add(pymolPath);
-        
+
         // Windows PyMOLWin.exe needs an extra argument
-        if (Platform.isWin() && pymolPath.toLowerCase(Locale.ROOT).endsWith("\\pymolwin.exe"))
+        if (Platform.isWin() && pymolPath.toLowerCase(Locale.ROOT)
+                .endsWith("\\pymolwin.exe"))
         {
           args.add("+2");
         }
         args.add("-R"); // https://pymolwiki.org/index.php/RPC
         ProcessBuilder pb = new ProcessBuilder(args);
-        Console.debug("Running PyMOL as "+String.join(" ", pb.command()));
+        Console.debug("Running PyMOL as " + String.join(" ", pb.command()));
         pymolProcess = pb.start();
         error = "";
         break;