From: James Procter <j.procter@dundee.ac.uk>
Date: Fri, 29 Sep 2023 12:46:36 +0000 (+0100)
Subject: JAL-4090 figures in paematrix doc
X-Git-Tag: Release_2_11_4_0~151
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=e281f3fc527a483dc69787f9a04bf84e50527e9d;p=jalview.git

JAL-4090 figures in paematrix doc
---

diff --git a/help/help/html/features/paematrices.html b/help/help/html/features/paematrices.html
index 6672bb3..efadf91 100644
--- a/help/help/html/features/paematrices.html
+++ b/help/help/html/features/paematrices.html
@@ -43,8 +43,10 @@
 			href="https://alphafold.ebi.ac.uk/entry/O04090">O04090 3D model</a>
 		at EBI-AlphaFoldDB).
 	</p>
-	<div align="center">
-	<img src="../structures/epas1_annotdetail.png" width="400"/></div>
+	<div style="display:flex; flex-wrap:wrap;"align="center" width="100%">
+	<figure><img src="../structures/epas1_annotdetail.png" height="300"/><figcaption>Alignment of EPAS1 homologs from Human, Rat and Cow, with predicted alignment error shown in Jalview</figcaption></figure>
+	<figure><img src="../structures/epas1_pae_ebiaf.png" height="300"/><figcaption>Predicted Alignment Error Matrix<br/>from <a href="https://alphafold.ebi.ac.uk/entry/Q99814">https://alphafold.ebi.ac.uk/entry/Q99814</a></figcaption></figure>
+	</div>
 	<p>
 		<strong>Importing PAE Matrices</strong>
 	</p>
diff --git a/help/help/html/structures/epas1_pae_ebiaf.png b/help/help/html/structures/epas1_pae_ebiaf.png
new file mode 100644
index 0000000..b7b4bf6
Binary files /dev/null and b/help/help/html/structures/epas1_pae_ebiaf.png differ