From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Fri, 26 Apr 2019 13:53:42 +0000 (+0100)
Subject: JAL-2743 class Javadoc
X-Git-Tag: Release_2_11_0~17^2^2~1
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=e345d5ddc35a0772ac52962555b23cc8024c6168;p=jalview.git

JAL-2743 class Javadoc
---

diff --git a/src/jalview/ext/ensembl/EnsemblMap.java b/src/jalview/ext/ensembl/EnsemblMap.java
index f01bd4f..b1c9d86 100644
--- a/src/jalview/ext/ensembl/EnsemblMap.java
+++ b/src/jalview/ext/ensembl/EnsemblMap.java
@@ -19,6 +19,18 @@ import org.json.simple.JSONObject;
 import org.json.simple.parser.JSONParser;
 import org.json.simple.parser.ParseException;
 
+/**
+ * A client for the Ensembl REST service /map endpoint, to convert from
+ * coordinates of one genome assembly to another.
+ * <p>
+ * Note that species and assembly identifiers passed to this class must be valid
+ * in Ensembl. They are not case sensitive.
+ * 
+ * @author gmcarstairs
+ * @see https://rest.ensembl.org/documentation/info/assembly_map
+ * @see https://rest.ensembl.org/info/assembly/human?content-type=text/xml
+ * @see https://rest.ensembl.org/info/species?content-type=text/xml
+ */
 public class EnsemblMap extends EnsemblRestClient
 {
   private static final String MAPPED = "mapped";