From: cmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Date: Wed, 18 Jan 2012 01:28:59 +0000 (+0000)
Subject: in progress
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=e4a52b80ff4d0f1daefba10bc5cd3711617c787f;p=jalview.git

in progress
---

diff --git a/forester/test_data/ncbi_sn.fasta b/forester/test_data/ncbi_sn.fasta
new file mode 100644
index 0000000..a0abee6
--- /dev/null
+++ b/forester/test_data/ncbi_sn.fasta
@@ -0,0 +1,101 @@
+>a
+WDAGDADAAPLGAAPTPGIFSFQPQSNPTPAVLRDTAARTSPPRPIVATAGPALSPVPPVVHLTLRRAGD
+DFSRRYRRDFAEMSSQLHLTP
+
+>b
+MAHAGGTGYDNREIVMKYIHYKLSQRGYEWDAGDAGAAPPGAAPAPGILSSQPGRTPAPSRTSPPPPPAA
+AAGPAPSPVPPVVHLTLRQAGDDFSRRYRRDFAEMSSQLHLTPFTARGRFATVVEELFRDGVNWGRIVAF
+FEFGGVMCVESVNREMSPLVDSIALWMTEYLNRHLHTWIQDNGGWDAFVELYGPSMRPLFDFSWLSLKAL
+LSLALVGACITLGAYLGHK
+
+>c
+MAQAGRTGYDNREIVMKYIHYKLSQRGYEWDAGDADAAPLGAAPTPGIFSFQPESNPMPAVHREMAARTS
+PLRPLVATAGPALSPVPPCVHLTLRRAGDDFSRRYRRDFAEMSSQLHLTPFTARGRFATVVEELFRDGVN
+WGRIVAFFEFGGVMCVESVNREMSPLVDNIALWMTEYLNRHLHTWIQDNGGWDAFVELYGPSMRPLFDFS
+WLSLKTLLSLALVGACITLGAYLGHK
+
+>d
+PSRTSPPPPPAAAAGPAPSPVPPVVHLTLRQAGDDFSRRYRRDFAEMSSQLHLTPFTARGRFATVVEELF
+RDGVNWGRIVAFFEFGGVMCVESVNREMSPLVDSIALWMTEYLNRHLHTWIQDNGGWVGARLDVSLSGTP
+RSQCGPSGGVWLGPGSRAGRWSKTTCVASLSLPLQRALPANPTVITPSLETLLPLSQPLRSKDPAFAAQ
+
+>e
+MAQAGRTGYDNREIVMKYIHYKLSQRGYEWDAGDADAAPLGAAPTPGIFSFQPESNPMPAVHRDMAARTS
+PLRPLVATAGPALSPVPPVVHLTLRRAGDDFSRRYRRDFAEMSSQLHLTPFTARGRFATVVEELFRDGVN
+WGRIVAFFEFGGVMCVESVNREMSPLVDNIALWMTEYLNRHLHTWIQDNGGWVGACLVE
+
+>f
+MAQAGRTGYDNREIVMKYIHYKLSQRGYEWDAGDADAAPLGAAPTPGIFSFQPESNPMPAVHRDMAARTS
+PLRPLVATAGPALSPVPPVVHLTLRRAGDDFSRRYRRDFAEMSSQLHLTPFTARGRFATVVEELFRDGVN
+WGRIVAFFEFGGVMCVESVNREMSPLVDNIALWMTEYLNRHLHTWIQDNGGWDAFVELYGPSMRPLFDFS
+WLSLKTLLSLALVGACITLGAYLGHK
+
+>g
+MAHAGRTGYDNREIVMKYIHYKLSQRGYEWDAGDVGAAPPGAAPAPGIFSSQPGHTPHPAASRDPVARTS
+PLQTPAAPGAAAGPALSPVPPVVHLTLRQAGDDFSRRYRRDFAEMSSQLHLTPFTARGRFATVVEELFRD
+GVNWGRIVAFFEFGGVMCVESVNREMSPLVDNIALWMTEYLNRHLHTWIQDNGGWDAFVELYGPSMRPLF
+DFSWLSLKTLLSLALVGACITLGAYLGHK
+
+>h
+MAHAGRTGYDNREIVMKYIHYKLSQRGYEWDAGDVGAAPPGAAPAPGIFSSQPGHTPHPAASRDPVARTS
+PLQTPAAPGAAAGPALSPVPPVVHLTLRQAGDDFSRRYRRDFAEMSSQLHLTPFTARGRFATVVEELFRD
+GVNWGRIVAFFEFGGVMCVESVNREMSPLVDNIALWMTEYLNRHLHTWIQDNGGWVGALGDVSLG
+
+>i
+MAHAGRTGYDNREIVMKYIHYKLSQRGYEWDAGDVGAAPPGAAPAPGIFSSQPGHTPHPAASRDPVARTS
+PLQTPAAPGAAAGPALSPVPPVVHLTLRQAGDDFSRRYRRDFAEMSSQLHLTPFTARGRFATVVEELFRD
+GVNWGRIVAFFEFGGVMCVESVNREMSPLVDNIALWMTEYLNRHLHTWIQDNGGWDAFVELYGPSMRPLF
+DFSWLSLKTLLSLALVGACITLGAYLGHK
+
+>j
+MAHAGGTGYDNREIVMKYIHYKLSQRGYEWDAGDAGAAPPGAAPAPGILSSQPGRTPAPSRTSPPPPPAA
+AAGPAPSPVPPVVHLTLRQAGDDFSRRYRRDFAEMSSQLHLTPFTARGRFATVVEELFRDGVNWGRIVAF
+FEFGGVMCVESVNREMSPLVDSIALWMTEYLNRHLHTWIQDNGGW
+
+>k
+MAQAGRTGYDNREIVMKYIHYKLSQRGYEWDAGDADAAPLGAAPTPGIFSFQPESNPMPAVHRDMAARTS
+PLRPLVATAGPALSPVPPVVHLTLRRAGDDFSRRYRRDFAEMSSQLHLTPFTARGRFATVVEELFRDGVN
+WGRIVAFFEFGGVMCVESVNREMSPLVDNIALWMTEYLNRHLHTWIQDNGGWDAFVELYGPSMRPLFDFS
+WLSLKTLLSLALVGACITLGAYLGHK
+
+>l
+MAHAGGTGYDNREIVMKYIHYKLSQRGYEWDAGDAGAAPPGAAPAPGILSSQPGRTPAPSRTSPPPPPAA
+AAGPAPSPVPPVVHLTLRQAGDDFSRRYRRDFAEMSSQLHLTPFTARGRFATVVEELFRDGVNWGRIVAF
+FEFGGVMCVESVNREMSPLVDSIALWMTEYLNRHLHTWIQDNGGWDAFVELYGPSMRPLFDFSWLSLKAL
+LSLALVGACITLGAYLGHK
+
+>m
+CVESVNREMSPLVDNIAL
+
+>n
+MAQAGRTGYDNREIVMKYIHYKLSQRGYEWDTGDEDSAPLRAAPTPGIFSFQPESNRTPAVHRDTAARTS
+PLRPLVANAGPALSPVPPVVHLTLRRAGDDFSRRYRRDFAEMSSQLHLTPFTARGRFATVVEELFRDGVN
+WGRIVAFFEFGGVMCVGSVNREMSPLVDNIALWMTEYLNRHLHTWIQDNGGWDAFVELYGPSMRPLFDFS
+WLSLKTLLSLALVGACITLGAYLGHK
+
+>o
+MSQNRELVVFYIKYKLSQRNYPLNHIVLNEPPNRTGAGDGGLGEEQSTETHANGTFTGTSPGTPPVSPLR
+QQPLPSTTTTTRLDAVKEALRDTANEFELRYARAFSDLHSQLHITPATAYQSFENVMDEVFRDGVNWGRI
+VGLFAFGGALCVECVEREMSPLVGRIVEWMTVYLDNHIQPWIQSQGGWERFAEIFGQDAAAESRRSQESF
+KKWLLVGMTVVTGVVVGSLFAQKRL
+
+>p
+GRFATVVEELFRDGVNWGRIVAFFEFGGVMCVESVNREMSPLVDNIALWMTEYLNRHLHTWIQDNGGWDA
+FVELYGPSMQPLFDFSWLSLKALLSLALVGACITLGAYLG
+
+>q
+DEVFRDGVNWGRIVGLFAFGGALCVECVEKEMSPLVGRIIEWMTVYLDNHIQPWIQSQRGWERFAEIFGQ
+DAAAESRRSQESFKKWLLAGMTLVTGVVVGSLIAQKRL
+
+>r
+MANEISYDNRNIVEKYLKHKLSKRGYVWKCQSSAEEDDTFNKAVEESSPNSDRRLQAPSAGGGNNSECLI
+ARVTRSDPHLRLYRVLRDAGDEIERIYQREFEEMSQQMVFNPNSAQRSFLTVAEELFRDGVNWGRIIAFF
+EFGGTMCVESVNREMASQVDNIAHWMTDYLNGPLENWIEENGGWDAFVEMYGQQRDSVFHPFSYLTKVLG
+LAALGLAGVTIGAFFAQK
+
+>s
+MANEISYDNRNIVEKYLKHKLSKRGYVWKCQSSAEEDDTFNKAVEESSPNSDRRLQAPSAGGGNNSECLI
+ARVTRSDPHLRLYRVLRDAGDEIERIYQREFEEMSQQMVFNPNSAQRSFLTVAEELFRDGVNWGRIIAFF
+EFGGTMCVESVNREMASQVDNIAHWMTDYLNGPLENWIEENGGWDAFVEMYGQQRDSVFHPFSYLTKVLG
+LAALGLAGVTIGAFFAQK
+