From: Jim Procter <jprocter@compbio.dundee.ac.uk>
Date: Tue, 5 Nov 2013 17:33:29 +0000 (+0000)
Subject: JAL-1400 found a fix for the sandbox exception - need a 'permissions' parameter
X-Git-Tag: Release_2_8_0b1~1^2~34
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=e4d6693122fb528cd1ad24017cb87f0567c0ec81;p=jalview.git

JAL-1400 found a fix for the sandbox exception - need a 'permissions' parameter
http://stackoverflow.com/questions/18914650/can-you-sign-a-java-applet-but-keep-it-in-the-sandbox-not-give-it-full-access-t
http://docs.oracle.com/javase/tutorial/deployment/applet/html.html
---

diff --git a/examples/applets.html b/examples/applets.html
index c53cc7a..255f104 100755
--- a/examples/applets.html
+++ b/examples/applets.html
@@ -178,6 +178,7 @@ var _gaq = _gaq || [];_gaq.push(["_setAccount", "UA-9060947-1"]);_gaq.push(["_tr
       <td width="10%" valign="center"><applet
         code="jalview.bin.JalviewLite" width="140" height="35"
         archive="jalviewApplet.jar">
+<param name="permissions" value="sandbox">
        <param name="file" value="uniref50.fa">
         <param name="treeFile" value="ferredoxin.nw">
          <param name="userDefinedColour"
@@ -203,6 +204,7 @@ var _gaq = _gaq || [];_gaq.push(["_setAccount", "UA-9060947-1"]);_gaq.push(["_tr
       <td width="10%" valign="center"><applet
         code="jalview.bin.JalviewLite" width="140" height="35"
         archive="jalviewApplet.jar">
+<param name="permissions" value="sandbox">
        <param name="file" value="uniref50.fa">
         <param name="features" value="exampleFeatures.txt">
          <param name="showFeatureSettings" value="true">
@@ -226,6 +228,7 @@ var _gaq = _gaq || [];_gaq.push(["_setAccount", "UA-9060947-1"]);_gaq.push(["_tr
       <td width="10%" valign="center"><applet
         code="jalview.bin.JalviewLite" width="140" height="35"
         archive="jalviewApplet.jar,JmolApplet-12.2.4.jar">
+<param name="permissions" value="sandbox">
        <param name="file" value="uniref50.fa">
         <!-- <param name="debug" value="true">
                         -->
@@ -252,6 +255,7 @@ var _gaq = _gaq || [];_gaq.push(["_setAccount", "UA-9060947-1"]);_gaq.push(["_tr
       <td width="10%" valign="middle"><applet
         code="jalview.bin.JalviewLite" width="140" height="35"
         archive="jalviewApplet.jar">
+<param name="permissions" value="sandbox">
        <param name="file" value="jpred_msa.fasta">
         <param name="jnetfile" value="jpred_msa.seq.concise">
          <param name="defaultColour" value="Clustal">
@@ -284,6 +288,7 @@ var _gaq = _gaq || [];_gaq.push(["_setAccount", "UA-9060947-1"]);_gaq.push(["_tr
       <td width="10%" valign="center"><applet
         code="jalview.bin.JalviewLite" width="140" height="35"
         archive="jalviewApplet.jar">
+<param name="permissions" value="sandbox">
        <param name="file" value="RF00031_folded.stk">
         <param name="defaultColour" value="Purine/Pyrimidine">
          <param name="showAnnotation" value="true">