From: jprocter <Jim Procter>
Date: Fri, 30 Apr 2010 07:03:41 +0000 (+0000)
Subject: 2.5 doc
X-Git-Tag: Release_2_5~11
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=e641357d074cf8f3b9ee877f47879d6e22ac1ce1;p=jalview.git

2.5 doc
---

diff --git a/help/html/features/annotation.html b/help/html/features/annotation.html
index c26ec6f..8459e27 100755
--- a/help/html/features/annotation.html
+++ b/help/html/features/annotation.html
@@ -41,7 +41,7 @@ area (below the sequence ID area).
         to the annotation (numerical or otherwise) at each position in the row. 
         This is useful to export alignment quality measurements for further analysis.</em> 
       </li>
-      <li><strong>Scale Label To Column</strong><em>(introduced in 2.4.1)</em><br>
+      <li><strong>Scale Label To Column</strong><em>(introduced in 2.5)</em><br>
       <em>Selecting this toggles whether column labels will be shrunk to fit within each column, or displayed using the view's standard font size.</em></li>
 </ul>
 <p>
diff --git a/help/html/menus/popupMenu.html b/help/html/menus/popupMenu.html
index af20b39..6e8eeb2 100755
--- a/help/html/menus/popupMenu.html
+++ b/help/html/menus/popupMenu.html
@@ -79,7 +79,7 @@ not be accessible when in 'Cursor Mode' (toggled with the F2 key).</em></p>
     <li><em>Sequence links</em> allow you to send the sequences in the currently selected region to a web server.</li>
     <li><em>Sequence and ID links</em> allow you to send sets of IDs and sequences associated with the current selection to a web server.</li>
     </ul>
-    <em>Group Links were added in Jalview 2.4.1</em></li>
+    <em>Group Links were added in Jalview 2.5</em></li>
     </ul>
   </li>
   <li><strong>Sequence Id<br>
@@ -101,7 +101,7 @@ not be accessible when in 'Cursor Mode' (toggled with the F2 key).</em></p>
         Connections tab.<br>
         Since Jalview 2.4, links will also be made for database cross 
         references (where the database name exactly matches the link name set up in <a href="../features/preferences.html">Preferences</a>).
-        <br>Since Jalview 2.4.1, links are also shown for non-positional sequence features attached to 
+        <br>Since Jalview 2.5, links are also shown for non-positional sequence features attached to 
         the sequence, and any regular-expression based URL links that 
         matched the description line.
         </em><strong><br>
diff --git a/help/html/vamsas/index.html b/help/html/vamsas/index.html
index ab31958..d9b5cb8 100644
--- a/help/html/vamsas/index.html
+++ b/help/html/vamsas/index.html
@@ -32,8 +32,8 @@ the menu options are as follows:<br>
 	This option will create a new session on your computer.</li>
 	<li><em>Load VAMSAS Session...</em><br>
 	This option will open a file browser window allowing you to select a
-	VAMSAS session archive from which a new session will be created.<br />
-	<em>New in 2.5</em>Sessions created from an imported document inherit
+	VAMSAS session archive from which a new session will be created.<br/>
+	<em>New in 2.5:</em>Sessions created from an imported document inherit
 	the file or URL for the document.</li>
 
 </ul>
@@ -110,10 +110,10 @@ menu entry to try to propagate the data to the other application.
 </table>
 <br />
 <p>Version 0.2 of the VAMSAS client library is used in <em>Jalview
-2.4.1</em>. For further details about the VAMSAS framework, please check the
+2.5</em>. For further details about the VAMSAS framework, please check the
 <a href="http://www.vamsas.ac.uk">VAMSAS website</a>. The VAMSAS
 framework is implemented as a Java 1.4 Library and depends on a number
-of other open source projects. Its source is will be released under the
+of other open source projects. Its source is released under the
 LGPL license. &nbsp;</p>
 </body>
 </html>