From: Jim Procter <jprocter@dundee.ac.uk>
Date: Mon, 19 Aug 2024 16:13:24 +0000 (+0100)
Subject: JAL-789 limit applicable score models to substitution matrix based ones
X-Git-Tag: Release_2_11_4_0~14^2~6^2~3
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=e69db6fc850b0e89328bb2dbc3d371930fa6c595;p=jalview.git

JAL-789 limit applicable score models to substitution matrix based ones
---

diff --git a/src/jalview/gui/CalculationChooser.java b/src/jalview/gui/CalculationChooser.java
index bd3c960..8e5cc9e 100644
--- a/src/jalview/gui/CalculationChooser.java
+++ b/src/jalview/gui/CalculationChooser.java
@@ -593,7 +593,7 @@ public class CalculationChooser extends JPanel
             .isSecondaryStructurePresent(alignmentAnnotations);
 
     List<ScoreModelI> models = getApplicableScoreModels(nucleotide,
-            pca.isSelected(), ssPresent, pasimap.isSelected());
+            pca.isSelected(), ssPresent, (pasimap.isSelected() || pairwise.isSelected()));
 
     /*
      * now we can actually add entries to the combobox,