From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Thu, 12 Apr 2018 13:28:25 +0000 (+0100)
Subject: JAL-1847 minor post-review updates
X-Git-Tag: Release_2_10_4~32^2~2
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=e7bad5b433c747aed96a6ec44fac18051d8b2476;p=jalview.git

JAL-1847 minor post-review updates
---

diff --git a/src/jalview/api/structures/JalviewStructureDisplayI.java b/src/jalview/api/structures/JalviewStructureDisplayI.java
index 9ba513a..2cd9348 100644
--- a/src/jalview/api/structures/JalviewStructureDisplayI.java
+++ b/src/jalview/api/structures/JalviewStructureDisplayI.java
@@ -105,8 +105,19 @@ public interface JalviewStructureDisplayI
    */
   void updateTitleAndMenus();
 
+  /**
+   * Answers true if the viewer should attempt to align any added structures,
+   * else false
+   * 
+   * @return
+   */
   boolean isAlignAddedStructures();
 
+  /**
+   * Sets the flag for whether added structures should be aligned
+   * 
+   * @param alignAdded
+   */
   void setAlignAddedStructures(boolean alignAdded);
 
 }
diff --git a/src/jalview/gui/AppJmol.java b/src/jalview/gui/AppJmol.java
index dae54a5..6c934c8 100644
--- a/src/jalview/gui/AppJmol.java
+++ b/src/jalview/gui/AppJmol.java
@@ -57,7 +57,7 @@ public class AppJmol extends StructureViewerBase
 
   private static final String SPACE = " ";
 
-  private static final String BACKSLASH = "\"";
+  private static final String QUOTE = "\"";
 
   AppJmolBinding jmb;
 
@@ -325,8 +325,8 @@ public class AppJmol extends StructureViewerBase
     StringBuilder fileList = new StringBuilder();
     for (String s : files)
     {
-      fileList.append(SPACE).append(BACKSLASH)
-              .append(Platform.escapeString(s)).append(BACKSLASH);
+      fileList.append(SPACE).append(QUOTE)
+              .append(Platform.escapeString(s)).append(QUOTE);
     }
     String filesString = fileList.toString();