From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Wed, 13 Jun 2012 09:35:20 +0000 (+0100)
Subject: JAL-1115 refactor base collection for Alignment from Vector to locally synchronized... 
X-Git-Tag: Jalview_2_9~478
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=e826112670b160df06adb4030835624248ac4a8a;hp=f1cf002d98f35e6d471ebf1af95b37c63cf86d1c;p=jalview.git

JAL-1115 refactor base collection for Alignment from Vector to locally synchronized List<SequenceI>
(missed this one from d6509fcf3a8cc90616e18cb22cec97f85c722bb8)
---

diff --git a/src/jalview/gui/Jalview2XML.java b/src/jalview/gui/Jalview2XML.java
index 9f109ee..14650a9 100644
--- a/src/jalview/gui/Jalview2XML.java
+++ b/src/jalview/gui/Jalview2XML.java
@@ -3076,8 +3076,8 @@ public class Jalview2XML
               {
                 for (int g = 0; g < al.getGroups().size(); g++)
                 {
-                  jalview.datamodel.SequenceGroup sg = (jalview.datamodel.SequenceGroup) al
-                          .getGroups().elementAt(g);
+                  jalview.datamodel.SequenceGroup sg = al
+                          .getGroups().get(g);
 
                   if (sg.cs == null)
                   {