From: amwaterhouse <Andrew Waterhouse>
Date: Thu, 18 Aug 2005 09:20:07 +0000 (+0000)
Subject: Use aa index for aboveThreshold as well as colour index
X-Git-Tag: Release_2_03~2
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=e8bf50102d1e937c715bf15046ae5076343313c0;p=jalview.git

Use aa index for aboveThreshold as well as colour index
---

diff --git a/src/jalview/schemes/ResidueColourScheme.java b/src/jalview/schemes/ResidueColourScheme.java
index 71f12c1..785d22d 100755
--- a/src/jalview/schemes/ResidueColourScheme.java
+++ b/src/jalview/schemes/ResidueColourScheme.java
@@ -94,9 +94,11 @@ public class ResidueColourScheme implements ColourSchemeI
      */
     public Color findColour(String s, int j)
     {
-        if ((threshold == 0) || aboveThreshold(s, j))
+        int index = ((Integer) (ResidueProperties.aaHash.get(s))).intValue();
+
+        if ((threshold == 0) || aboveThreshold(ResidueProperties.aa[index], j))
         {
-            return colors[((Integer) (ResidueProperties.aaHash.get(s))).intValue()];
+            return colors[index];
         }
         else
         {