From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Thu, 6 Sep 2012 22:02:20 +0000 (+0100)
Subject: JAL-958
X-Git-Tag: Jalview_2_9~311
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=e8daf72014ae089f2abe2a4561ccc91f39f995ad;p=jalview.git

JAL-958
---

diff --git a/help/html/calculations/consensus.html b/help/html/calculations/consensus.html
index 71bd90f..d0c524f 100644
--- a/help/html/calculations/consensus.html
+++ b/help/html/calculations/consensus.html
@@ -31,11 +31,16 @@
 the consensus annotation label to copy the alignment's consensus sequence to the 
 clipboard. 
 
-<p><strong>Sequence logo</strong></p> 
-By clicking on the label you can also activate the sequence logo. It
-indicates the relative amount of residues per column which can be
-estimated by it's size in the logo. The tooltip of a column gives the
-exact numbers for all occuring residues.
-</p>
+<p><strong>Sequence logo</strong></p>
+	By clicking on the label you can also activate the sequence logo. It
+	indicates the relative amount of residues per column which can be
+	estimated by it's size in the logo. The tooltip of a column gives the
+	exact numbers for all occuring residues.
+	<br />If columns of the alignment are very diverse, then it can
+	sometimes be difficult to see the sequence logo - in this case, right
+	click on the annotation row label and select
+	<strong>Normalise Consensus Logo</strong> to scale all columns of the
+	logo to the same height.
+	</p>
 </body>
 </html>