From: cmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Date: Mon, 10 Dec 2012 19:01:08 +0000 (+0000)
Subject: work on data buffer for aLeaves MAFFT suite + clean up
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=ea9680e31258a26c47104bd8c38812d583669977;p=jalview.git

work on data buffer for aLeaves MAFFT suite + clean up
---

diff --git a/forester/aptx/aptx_configuration_files/_aptx_configuration_file b/forester/aptx/aptx_configuration_files/_aptx_configuration_file
index 36217a6..76e4617 100644
--- a/forester/aptx/aptx_configuration_files/_aptx_configuration_file
+++ b/forester/aptx/aptx_configuration_files/_aptx_configuration_file
@@ -79,9 +79,14 @@ native_ui: ?
 #                      taxonomy_scientific_name
 #                      taxonomy_code
 #                      user_selected
-#  To determine where to return data by clicking on "Return ...": 'ext_descendents_data_to_return_on'
-#     Possible values: window
-#                      console
+#
+#  To determine where to return data selected by user clicking on "Return ...": 'ext_descendents_data_to_return_on'
+#     Contents of buffer can be obtained with method 'getCurrentExternalNodesDataBuffer()' of
+#     classes org.forester.archaeopteryx.MainFrame and org.forester.archaeopteryx.ArchaeopteryxE
+#     Possible values: window (for output to window and buffer)
+#                      console (for output to console and buffer)
+#                      buffer_only (for output to buffer only)
+#
 #  To override label for menu item to return data of external nodes (default ""Return ..."): 'label_for_get_ext_descendents_data'
 #     Example: 'label_for_get_ext_descendents_data: Get_Node_Data'
 # 
diff --git a/forester/aptx/aptx_configuration_files/_aptx_configuration_file_1 b/forester/aptx/aptx_configuration_files/_aptx_configuration_file_1
index 69cf370..c32e779 100644
--- a/forester/aptx/aptx_configuration_files/_aptx_configuration_file_1
+++ b/forester/aptx/aptx_configuration_files/_aptx_configuration_file_1
@@ -79,9 +79,14 @@ native_ui: ?
 #                      taxonomy_scientific_name
 #                      taxonomy_code
 #                      user_selected 
-#  To determine where to return data by clicking on "Return ...": 'ext_descendents_data_to_return_on'
-#     Possible values: window
-#                      console
+#
+#  To determine where to return data selected by user clicking on "Return ...": 'ext_descendents_data_to_return_on'
+#     Contents of buffer can be obtained with method 'getCurrentExternalNodesDataBuffer()' of
+#     classes org.forester.archaeopteryx.MainFrame and org.forester.archaeopteryx.ArchaeopteryxE
+#     Possible values: window (for output to window and buffer)
+#                      console (for output to console and buffer)
+#                      buffer_only (for output to buffer only)
+#
 #  To override label for menu item to return data of external nodes (default ""Return ..."): 'label_for_get_ext_descendents_data'
 #     Example: 'label_for_get_ext_descendents_data: Get_Node_Data'
 #