From: cmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Date: Tue, 12 Nov 2013 00:25:15 +0000 (+0000)
Subject: inprogress
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=eac0e41b0814a58147a0311135b20803d8cd9c03;p=jalview.git

inprogress
---

diff --git a/forester/ruby/evoruby/lib/evo/tool/phylogeny_factory.rb b/forester/ruby/evoruby/lib/evo/tool/phylogeny_factory.rb
index 7f84afa..1992783 100644
--- a/forester/ruby/evoruby/lib/evo/tool/phylogeny_factory.rb
+++ b/forester/ruby/evoruby/lib/evo/tool/phylogeny_factory.rb
@@ -265,10 +265,14 @@ module Evoruby
 
     def update_phylo_pl_options( phylo_pl_options, bootstraps )
       opts = phylo_pl_options
+      puts
+      puts "opts: " + opts
       unless opts  =~ /B\d/
         opts = 'B' + bootstraps.to_s + opts
       end
       opts = '-' + opts
+      puts
+      puts "new opts: " + opts
       opts
     end