From: cmzmasek <cmzmasek@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Date: Mon, 28 Oct 2013 23:31:41 +0000 (+0000)
Subject: in progress
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=eae9b4d545845ccc94c1465c1664086b22188ad1;p=jalview.git

in progress
---

diff --git a/forester/java/src/org/forester/ws/seqdb/EbiDbEntry.java b/forester/java/src/org/forester/ws/seqdb/EbiDbEntry.java
index 8446c19..340fc3b 100644
--- a/forester/java/src/org/forester/ws/seqdb/EbiDbEntry.java
+++ b/forester/java/src/org/forester/ws/seqdb/EbiDbEntry.java
@@ -208,9 +208,17 @@ public final class EbiDbEntry implements SequenceDatabaseEntry {
                 in_protein = false;
             }
             if ( in_source ) {
-                final Matcher m = taxon_PATTERN.matcher( line );
-                if ( m.find() ) {
-                    e.setTaxId( m.group( 1 ) );
+                final Matcher ti = taxon_PATTERN.matcher( line );
+                if ( ti.find() ) {
+                    e.setTaxId( ti.group( 1 ) );
+                }
+                final Matcher chr = chromosome_PATTERN.matcher( line );
+                if ( chr.find() ) {
+                    e.setChromosome( chr.group( 1 ) );
+                }
+                final Matcher map = map_PATTERN.matcher( line );
+                if ( map.find() ) {
+                    e.setMap( map.group( 1 ) );
                 }
             }
             if ( in_cds || in_gene ) {
@@ -259,7 +267,31 @@ public final class EbiDbEntry implements SequenceDatabaseEntry {
         }
         return e;
     }
+    private String _map;
+    private String _chromosome;
+
+    private void setMap( String map ) {
+        _map = map;
+        
+    }
+
+    private void setChromosome( String chromosome ) {
+        _chromosome = chromosome;
+        
+    }
 
+    @Override
+    public String getMap( ) {
+        return _map;
+        
+    }
+    @Override
+    public String  getChromosome() {
+        return _chromosome;
+        
+    }
+    
+    
     private static void x( final StringBuilder sb, final String s ) {
         if ( sb.length() > 0 ) {
             sb.append( " " );