From: Jim Procter <jprocter@issues.jalview.org>
Date: Sun, 4 Jun 2017 11:02:16 +0000 (+0100)
Subject: JAL-2291 fixed broken asserts for SequenceI.getInsertionsAsBits
X-Git-Tag: Release_2_10_2~3^2~36
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=ecec44444833a1ed48f9a99c38ec07f572982436;p=jalview.git

JAL-2291 fixed broken asserts for SequenceI.getInsertionsAsBits
---

diff --git a/test/jalview/datamodel/SequenceTest.java b/test/jalview/datamodel/SequenceTest.java
index ae82d13..a52f0a2 100644
--- a/test/jalview/datamodel/SequenceTest.java
+++ b/test/jalview/datamodel/SequenceTest.java
@@ -78,8 +78,13 @@ public class SequenceTest
 
     BitSet gapfield = aseq.getInsertionsAsBits();
     BitSet expectedgaps = new BitSet();
-    expectedgaps.set(2, 4);
-    expectedgaps.set(6, 8);
+    expectedgaps.set(2, 5);
+    expectedgaps.set(6, 9);
+
+    assertEquals(6, expectedgaps.cardinality());
+
+    assertEquals("getInsertionsAsBits didn't mark expected number of gaps",
+            6, gapfield.cardinality());
 
     assertEquals("getInsertionsAsBits not correct.", expectedgaps, gapfield);
   }