From: jprocter <Jim Procter>
Date: Fri, 30 Apr 2010 07:02:32 +0000 (+0000)
Subject: vamsas 0.2 client capabilities
X-Git-Tag: Release_2_5~13
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=ed407473fa5bc185476cf2584f5551d1b4e1617c;p=jalview.git

vamsas 0.2 client capabilities
---

diff --git a/help/html/features/clarguments.html b/help/html/features/clarguments.html
index aebd7fe..e571b12 100644
--- a/help/html/features/clarguments.html
+++ b/help/html/features/clarguments.html
@@ -63,6 +63,12 @@
 		<div align="left">Turn off google analytics usage tracking</div>
 		</td>
 	</tr>
+	<tr><td>
+	<div align="center">-[no]sortbytree</div>
+		<td>
+		<div align="left">Enable or disable automatic sorting of associated view when a new tree is displayed</div>
+		</td>
+	</tr>
 	<tr>
 		<td>
 		<div align="center">-dasserver nickname=URL</div>
@@ -91,6 +97,28 @@
 		</td>
 	</tr>
 	<tr>
+	<td>
+		<div align="center">-vdoc VAMSAS DOCUMENT FILE or URL</div>
+		<td>
+		<div align="left">Import the given vamsas document into a new session.<br><em>New in 2.5</em></div>
+		</td>
+	</tr>
+	<tr>
+		<td>
+		<div align="center">-vsess VAMSAS SESSION URL</div>
+		<td>
+		<div align="left">Join the given vamsas session<br>If a document was also specified, this will be imported first and then committed as new data from Jalview to the specified session (Experimental - not yet enabled!).<em>New in 2.5</em></div></div>
+		</td>
+	</tr>
+	<tr>
+		<td>
+		<div align="center">-groovy FILE</div>
+		<td>
+		<div align="left">Execute groovy script in FILE (where FILE may be 'STDIN' to read from the standard input) after all other
+		arguments have been processed</div>
+		</td>
+	</tr>
+	<tr>
 		<td>
 		<div align="center">-fasta FILE</div>
 		</td>