From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Fri, 10 Jul 2015 05:17:34 +0000 (+0100)
Subject: JAL-1807 explicit imports (jalview.workers)
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=eee8dfa05eeea5b7cc295ba020647842502efe63;p=jalview.git

JAL-1807 explicit imports (jalview.workers)
---

diff --git a/src/jalview/workers/ConservationThread.java b/src/jalview/workers/ConservationThread.java
index 236bccf..32e13f2 100644
--- a/src/jalview/workers/ConservationThread.java
+++ b/src/jalview/workers/ConservationThread.java
@@ -26,6 +26,7 @@ import jalview.api.AlignViewportI;
 import jalview.api.AlignmentViewPanel;
 import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.AlignmentI;
+import jalview.schemes.ResidueProperties;
 
 import java.util.ArrayList;
 import java.util.List;
@@ -97,7 +98,7 @@ public class ConservationThread extends AlignCalcWorker implements
       try
       {
         cons = Conservation.calculateConservation("All",
-                jalview.schemes.ResidueProperties.propHash, 3,
+                ResidueProperties.propHash, 3,
                 alignment.getSequences(), 0, alWidth - 1, false,
                 ConsPercGaps, quality != null);
       } catch (IndexOutOfBoundsException x)
diff --git a/src/jalview/workers/StrucConsensusThread.java b/src/jalview/workers/StrucConsensusThread.java
index 4471b6e..c64521f 100644
--- a/src/jalview/workers/StrucConsensusThread.java
+++ b/src/jalview/workers/StrucConsensusThread.java
@@ -116,7 +116,7 @@ public class StrucConsensusThread extends AlignCalcWorker implements
       {
         final SequenceI[] arr = alignment.getSequencesArray();
         nseq = arr.length;
-        jalview.analysis.StructureFrequency.calculate(arr, 0,
+        StructureFrequency.calculate(arr, 0,
                 alignment.getWidth(), hStrucConsensus, true, rnaStruc);
       } catch (ArrayIndexOutOfBoundsException x)
       {