From: James Procter <j.procter@dundee.ac.uk>
Date: Tue, 21 Nov 2023 18:02:57 +0000 (+0000)
Subject: JAL-4345 patch and release notes
X-Git-Tag: Release_2_11_4_0~71^2
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=efee78d45ceeb879d98fedd399a71d84a5ecd5f8;p=jalview.git

JAL-4345 patch and release notes
---

diff --git a/help/markdown/releases/release-2_11_3_1.md b/help/markdown/releases/release-2_11_3_1.md
index dc9cf90..5ecb698 100644
--- a/help/markdown/releases/release-2_11_3_1.md
+++ b/help/markdown/releases/release-2_11_3_1.md
@@ -12,6 +12,7 @@ channel: "release"
 
 - <!-- JAL-4340 --> Getdown does not preserve executable permission of jalview.sh file when it gets updated
 - <!-- JAL-4347 --> Single position features from Uniprot are incorrectly parsed as non-positional features
+- <!-- JAL-4345 --> Double clicking in PAE annotation to select column groups doesn't always select group under the mouse
 
 ### New Known Issues
 
diff --git a/src/jalview/gui/AnnotationPanel.java b/src/jalview/gui/AnnotationPanel.java
index e1193c9..68ceff0 100755
--- a/src/jalview/gui/AnnotationPanel.java
+++ b/src/jalview/gui/AnnotationPanel.java
@@ -677,7 +677,7 @@ public class AnnotationPanel extends JPanel implements AwtRenderPanelI,
             {
               SequenceI rseq = clicked.sequenceRef;
               BitSet grp = new BitSet();
-              grp.or(matrix.getGroupsFor(currentX));
+              grp.or(matrix.getGroupsFor(forCurrentX.getPosition()));
               // TODO: cXci needs to be mapped to real groups
               for (int c = fr; c <= to; c++)
               {