From: cmzmasek@gmail.com Date: Thu, 11 Oct 2012 20:31:29 +0000 (+0000) Subject: in progress X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=eff77918baeb51c5171f66daf331d1fab7d1586c;p=jalview.git in progress --- diff --git a/forester/ruby/evoruby/lib/evo/tool/taxonomy_processor.rb b/forester/ruby/evoruby/lib/evo/tool/taxonomy_processor.rb index 9674200..210d9ee 100644 --- a/forester/ruby/evoruby/lib/evo/tool/taxonomy_processor.rb +++ b/forester/ruby/evoruby/lib/evo/tool/taxonomy_processor.rb @@ -215,6 +215,8 @@ module Evoruby new_desc = nil my_species = nil # if desc =~ /^>?\s*\S{1,10}_([0-9A-Z]{3,5})/ + desc.gsub!( /:\s+/, ":" ) #new + desc.gsub!( /\s+/, " " ) #new if desc =~ /^>?\s*\S{1,10}_([A-Z]{3,5})/ new_desc = counter.to_s( 16 ) + "_" + $1 elsif SIMPLE