From: Jim Procter <jprocter@issues.jalview.org>
Date: Mon, 15 May 2017 16:26:53 +0000 (+0100)
Subject: JAL-2507 capitalisation for annotation lines generated from stockholm annotation
X-Git-Tag: Release_2_10_2~3^2~88^2~1
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=f05332c8cc2a3a1d00a8dae38b8920ae799fb840;p=jalview.git

JAL-2507 capitalisation for annotation lines generated from stockholm annotation
---

diff --git a/src/jalview/io/StockholmFile.java b/src/jalview/io/StockholmFile.java
index ed50db8..c2f3683 100644
--- a/src/jalview/io/StockholmFile.java
+++ b/src/jalview/io/StockholmFile.java
@@ -1163,10 +1163,10 @@ public class StockholmFile extends AlignFile
     if (typeIds == null)
     {
       typeIds = new Hashtable();
-      typeIds.put("SS", "secondary structure");
-      typeIds.put("SA", "surface accessibility");
+      typeIds.put("SS", "Secondary Structure");
+      typeIds.put("SA", "Surface Accessibility");
       typeIds.put("TM", "transmembrane");
-      typeIds.put("PP", "posterior probability");
+      typeIds.put("PP", "Posterior Probability");
       typeIds.put("LI", "ligand binding");
       typeIds.put("AS", "active site");
       typeIds.put("IN", "intron");
@@ -1177,7 +1177,7 @@ public class StockholmFile extends AlignFile
       typeIds.put("DE", "description");
       typeIds.put("DR", "reference");
       typeIds.put("LO", "look");
-      typeIds.put("RF", "reference positions");
+      typeIds.put("RF", "Reference Positions");
 
     }
   }