From: amwaterhouse <Andrew Waterhouse>
Date: Tue, 10 Oct 2006 10:43:52 +0000 (+0000)
Subject: Use AAFrequency final keys
X-Git-Tag: Release_2_2~298
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=f05c81344f3bba0900c764d30df0cd2d028b8ed4;p=jalview.git

Use AAFrequency final keys
---

diff --git a/src/jalview/appletgui/AlignViewport.java b/src/jalview/appletgui/AlignViewport.java
index b369b1f..1fa3e3f 100755
--- a/src/jalview/appletgui/AlignViewport.java
+++ b/src/jalview/appletgui/AlignViewport.java
@@ -321,12 +321,12 @@ public class AlignViewport
     {
       float value = 0;
       if(ignoreGapsInConsensusCalculation)
-        value = ((Float)hconsensus[i].get("pid_nogaps")).floatValue();
+        value = ((Float)hconsensus[i].get(AAFrequency.PID_NOGAPS)).floatValue();
       else
-        value = ((Float)hconsensus[i].get("pid_gaps")).floatValue();
+        value = ((Float)hconsensus[i].get(AAFrequency.PID_GAPS)).floatValue();
 
-      String maxRes = hconsensus[i].get("maxResidue").toString();
-      String mouseOver = hconsensus[i].get("maxResidue") + " ";
+      String maxRes = hconsensus[i].get(AAFrequency.MAXRESIDUE).toString();
+      String mouseOver = maxRes;
       if (maxRes.length() > 1)
       {
         mouseOver = "[" + maxRes + "] ";
@@ -966,7 +966,7 @@ public class AlignViewport
     // be done to remove redundancy.
     CigarArray aligview = getViewAsCigars(selectedOnly);
     if (aligview!=null) {
-      return new AlignmentView(aligview, 
+      return new AlignmentView(aligview,
           (selectedOnly && selectionGroup!=null) ? selectionGroup.getStartRes() : 0);
     }
     return null;