From: cmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Date: Wed, 2 Nov 2011 20:08:29 +0000 (+0000)
Subject: Edited wiki page forester through web user interface.
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=f08084db09ea6fbdff2e57661c0672825506b8af;p=jalview.git

Edited wiki page forester through web user interface.
---

diff --git a/wiki/forester.wiki b/wiki/forester.wiki
index 33be888..b6b2caa 100644
--- a/wiki/forester.wiki
+++ b/wiki/forester.wiki
@@ -25,8 +25,10 @@ import java.io.File;
 import java.io.IOException;
 
 import org.forester.io.parsers.PhylogenyParser;
+import org.forester.io.parsers.util.ParserUtils;
 import org.forester.io.writers.PhylogenyWriter;
 import org.forester.phylogeny.Phylogeny;
+import org.forester.phylogeny.PhylogenyMethods;
 import org.forester.util.ForesterUtil;
 
 public class Example {
@@ -36,14 +38,14 @@ public class Example {
         final File treefile = new File( "/path/to/tree.xml" );
         PhylogenyParser parser = null;
         try {
-            parser = ForesterUtil.createParserDependingOnFileType( treefile, true );
+            parser = ParserUtils.createParserDependingOnFileType( treefile, true );
         }
         catch ( final IOException e ) {
             e.printStackTrace();
         }
         Phylogeny[] phys = null;
         try {
-            phys = ForesterUtil.readPhylogenies( parser, treefile );
+            phys = PhylogenyMethods.readPhylogenies( parser, treefile );
         }
         catch ( final IOException e ) {
             e.printStackTrace();