From: cmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Date: Fri, 20 Jul 2012 21:19:27 +0000 (+0000)
Subject: linkers!
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=f163d2cab569686a45b75af1bd0e811a79eb55f1;p=jalview.git

linkers!
---

diff --git a/forester/ruby/evoruby/lib/evo/apps/multi_sequence_extractor.rb b/forester/ruby/evoruby/lib/evo/apps/multi_sequence_extractor.rb
index e610782..ef709e9 100644
--- a/forester/ruby/evoruby/lib/evo/apps/multi_sequence_extractor.rb
+++ b/forester/ruby/evoruby/lib/evo/apps/multi_sequence_extractor.rb
@@ -523,8 +523,8 @@ module Evoruby
          "and possibly genome multiple-sequence ('fasta') files> <output directory for sequences> <output directory for domains> [mapping file for " +
          "genome multiple-sequence ('fasta') files not in input dir]" )
       puts()
-      puts( "  option: -" + EXT_OPTION  + "=<int>: to extend extracted domains" )
-      puts( "          -" + EXTRACT_LINKERS_OPTION  + ": to extend linkers" )
+      puts(             "  option: -" + EXT_OPTION  + "=<int>: to extend extracted domains" )
+      puts( "          -" + EXTRACT_LINKERS_OPTION  + "      : to extract linkers" )
       puts()
       puts( "  " + "Example: \"mse.rb .prot . seqs doms ../genome_locations.txt\"" )
       puts()