From: cmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Date: Thu, 3 Nov 2011 17:45:45 +0000 (+0000)
Subject: Edited wiki page forester through web user interface.
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=f23f88016eca2ff913aa76c73a29c42cd170da69;p=jalview.git

Edited wiki page forester through web user interface.
---

diff --git a/wiki/forester.wiki b/wiki/forester.wiki
index f1af2e0..e7f54c8 100644
--- a/wiki/forester.wiki
+++ b/wiki/forester.wiki
@@ -289,36 +289,31 @@ import org.forester.archaeopteryx.TreeColorSet;
 
 public class phylo2graphics {
 
-    public static void main(final String[] args) {
-       try {
-           Configuration config = new Configuration();
-           // Could also read a configuration file with:
-           // Configuration config = new Configuration("my_configuration_file.txt", false, false, false);
-           config.putDisplayColors(TreeColorSet.BACKGROUND, new Color(255, 255, 255));
-           config.putDisplayColors(TreeColorSet.BRANCH, new Color(0, 0, 0));
-           config.putDisplayColors(TreeColorSet.TAXONOMY, new Color(0, 0, 0));
-	   config.setPhylogenyGraphicsType(
-                      Options.PHYLOGENY_GRAPHICS_TYPE.RECTANGULAR);
-
-           AptxUtil.writePhylogenyToGraphicsFile(new File("my_tree.xml"),
-                                                 new File("my_tree.png"),
-                                                 800,  // width
-                                                 1000, // height
-					         GraphicsExportType.PNG,
-                                                 config);
-
-
-           // If the tree 'phy' already exists, can also use this:
-           // AptxUtil.writePhylogenyToGraphicsFile(phy,
-           //                                       new File("out.png"),
-           //                                       800,
-           //                                       1000,
-           //                                       GraphicsExportType.PNG,
-           //                                       config);
-
+    public static void main( final String[] args ) {
+        try {
+            final Configuration config = new Configuration();
+            // Could also read a configuration file with:
+            // Configuration config = new Configuration("my_configuration_file.txt", false, false, false);
+            config.putDisplayColors( TreeColorSet.BACKGROUND, new Color( 255, 255, 255 ) );
+            config.putDisplayColors( TreeColorSet.BRANCH, new Color( 0, 0, 0 ) );
+            config.putDisplayColors( TreeColorSet.TAXONOMY, new Color( 0, 0, 0 ) );
+            config.setPhylogenyGraphicsType( Options.PHYLOGENY_GRAPHICS_TYPE.RECTANGULAR );
+            AptxUtil.writePhylogenyToGraphicsFile( new File( "/home/czmasek/tol_117_TEST.xml" ),
+                                                   new File( "/home/czmasek/tol_117_TEST_.png" ),
+                                                   1000,
+                                                   1000,
+                                                   GraphicsExportType.PNG,
+                                                   config );
+            // If the tree 'phy' already exists, can also use this:
+            AptxUtil.writePhylogenyToGraphicsFile( phy,
+                                                   new File( "/home/czmasek/tol_117_TEST_.png" ),
+                                                   1000,
+                                                   1000,
+                                                   GraphicsExportType.PNG,
+                                                   config );
         }
-	catch (IOException e) {
-           e.printStackTrace();
+        catch ( final IOException e ) {
+            e.printStackTrace();
         }
     }
 }