From: Jim Procter <jprocter@issues.jalview.org>
Date: Wed, 17 May 2017 14:50:14 +0000 (+0100)
Subject: JAL-2447 add links to issues.jalview.org for experimental features
X-Git-Tag: Release_2_10_2~3^2~80
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=f2779aae6cd89facf15b81e053179e15e0315546;p=jalview.git

JAL-2447 add links to issues.jalview.org for experimental features
---

diff --git a/help/html/features/chimera.html b/help/html/features/chimera.html
index 89a29c9..68ac465 100644
--- a/help/html/features/chimera.html
+++ b/help/html/features/chimera.html
@@ -218,27 +218,32 @@
             These are only available if the <strong>Tools&#8594;Enable
             Experimental Features</strong> option is enabled. (Since Jalview 2.10.2)</em>
           <ul>
-            <li><strong>Write Jalview features</strong><br />
-              <em>Selecting this option will create new residue attributes
-              for any features currently visible in the associated
-              alignment views, allowing those positions to be selected
-              and analysed with via Chimera's 'Render by Attribute' tool
-              (found in the Tools submenu called Structure Analysis).<br />
-            <br />If you use this option, please remember to select the
-              <em>Refresh Menus</em> option in Chimera's Render by
-              Attribute dialog box in order to see the attributes
-              derived from Jalview sequence features.</em></li>
-            <li><strong>Fetch Chimera Attributes</strong><br />
-              <em>This submenu lists available Chimera residue attributes
-              that can be imported as Jalview features on associated
-              sequences.<br />This is particularly useful for
-              transferring quantitative positional annotation. For
-              example, structure similarity for an alignment can be
-              visualised by transferring the local RMSD attributes
-              generated by Chimera's Match->Align tool onto aligned
-              sequences and displayed with a <a
-              href="featureschemes.html">Graduated feature colour
-                scheme</a>.</em></li>
+            <li><strong>Write Jalview features</strong><br /> <em>Selecting
+                this option will create new residue attributes for any
+                features currently visible in the associated alignment
+                views, allowing those positions to be selected and
+                analysed with via Chimera's 'Render by Attribute' tool
+                (found in the Tools submenu called Structure Analysis).<br />
+                <br />If you use this option, please remember to select
+                the <em>Refresh Menus</em> option in Chimera's Render by
+                Attribute dialog box in order to see the attributes
+                derived from Jalview sequence features.
+            </em><br />
+            <a href="https://issues.jalview.org/browse/JAL-2295">View
+                this function's issue in Jalview's bug tracker</a></li>
+            <li><strong>Fetch Chimera Attributes</strong><br /> <em>This
+                submenu lists available Chimera residue attributes that
+                can be imported as Jalview features on associated
+                sequences.<br />This is particularly useful for
+                transferring quantitative positional annotation. For
+                example, structure similarity for an alignment can be
+                visualised by transferring the local RMSD attributes
+                generated by Chimera's Match->Align tool onto aligned
+                sequences and displayed with a <a
+                href="featureschemes.html">Graduated feature colour
+                  scheme</a>.
+            </em><a href="https://issues.jalview.org/browse/JAL-2296">View
+                this function's issue in Jalview's bug tracker</a></li>
           </ul></li>
         <li><strong>Help<br>
     </strong>