From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Sun, 5 Aug 2012 17:32:27 +0000 (+0100)
Subject: JAL-1131 - todos for later versions
X-Git-Tag: Jalview_2_9~402
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=f2a19cf17c426b1fca94c52d6e67085921302ee9;hp=0d6fdcd9c4597475c09fd96da43ddcadccf78fa1;p=jalview.git

JAL-1131 - todos for later versions
---

diff --git a/src/jalview/commands/EditCommand.java b/src/jalview/commands/EditCommand.java
index 9413ba8..d41f9f8 100644
--- a/src/jalview/commands/EditCommand.java
+++ b/src/jalview/commands/EditCommand.java
@@ -500,8 +500,11 @@ public class EditCommand implements CommandI
           fullseq = osp.substring(0, ipos) + nogaprep
                   + osp.substring(ipos + nogaprep.length());
           newds.setSequence(fullseq.toUpperCase());
-          // TODO: ensure newly created dataset sequence is added to the set of
+          // TODO: JAL-1131 ensure newly created dataset sequence is added to the set of
           // dataset sequences associated with the alignment.
+          // TODO: JAL-1131 fix up any annotation associated with new dataset
+          // sequence to ensure that original sequence/annotation relationships
+          // are preserved.
           command.seqs[i].setDatasetSequence(newds);
 
         }