From: Jim Procter <jprocter@issues.jalview.org>
Date: Wed, 16 Sep 2020 16:46:36 +0000 (+0100)
Subject: JAL-3748 preserve sequence IDs from original alignment view when alignment returned... 
X-Git-Tag: Release_2_11_1_3~5^2~27
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=f2fed0286852eee53492661a16309f6948f7ce05;p=jalview.git

JAL-3748 preserve sequence IDs from original alignment view when alignment returned by web service or analysis method.
---

diff --git a/src/jalview/datamodel/SeqCigar.java b/src/jalview/datamodel/SeqCigar.java
index c2a6a9c..c282d6e 100644
--- a/src/jalview/datamodel/SeqCigar.java
+++ b/src/jalview/datamodel/SeqCigar.java
@@ -587,6 +587,7 @@ public class SeqCigar extends CigarSimple
                       + (bounds[2] == 0 ? -1 : bounds[2]));
       seqs[i].setDatasetSequence(ref);
       seqs[i].setDescription(ref.getDescription());
+      SeqsetUtils.SeqCharacterUnhash(seqs[i],alseqs[i].seqProps);
     }
     if (segments != null)
     {