From: Jim Procter <jprocter@dundee.ac.uk>
Date: Thu, 19 Feb 2015 15:23:47 +0000 (+0000)
Subject: JAL-653 refactor sequence interface to separate concrete sequence data methods from... 
X-Git-Tag: Release_2_10_0~296^2~159
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=f49b3b02c911ef724b5e89df7008506bed9b498c;p=jalview.git

JAL-653 refactor sequence interface to separate concrete sequence data methods from sequence metadata methods & containers
---

diff --git a/src/jalview/datamodel/Sequence.java b/src/jalview/datamodel/Sequence.java
index cab1ac7..257c894 100755
--- a/src/jalview/datamodel/Sequence.java
+++ b/src/jalview/datamodel/Sequence.java
@@ -37,7 +37,7 @@ import jalview.util.StringUtils;
  * @author $author$
  * @version $Revision$
  */
-public class Sequence implements SequenceI
+public class Sequence extends ASequence implements SequenceI
 {
   SequenceI datasetSequence;
 
diff --git a/src/jalview/datamodel/SequenceI.java b/src/jalview/datamodel/SequenceI.java
index 38ae372..f69c8b6 100755
--- a/src/jalview/datamodel/SequenceI.java
+++ b/src/jalview/datamodel/SequenceI.java
@@ -26,12 +26,13 @@ import java.util.Vector;
 import fr.orsay.lri.varna.models.rna.RNA;
 
 /**
- * DOCUMENT ME!
+ * Methods for manipulating a sequence, its metadata and related annotation in
+ * an alignment or dataset.
  * 
  * @author $author$
  * @version $Revision$
  */
-public interface SequenceI
+public interface SequenceI extends ASequenceI
 {
   /**
    * Set the display name for the sequence