From: pvtroshin Date: Thu, 23 Jun 2011 10:56:00 +0000 (+0000) Subject: regenerated stubs & TODO X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=f500c782a6b1aa1bfcc8aae17e466b35fe59624e;p=jabaws.git regenerated stubs & TODO git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4314 e3abac25-378b-4346-85de-24260fe3988d --- diff --git a/TODO.txt b/TODO.txt index 45a50d4..b2060ce 100644 --- a/TODO.txt +++ b/TODO.txt @@ -1,3 +1,5 @@ +Add more detailed tests for webservices? + ? ideally should introduce native Mac support (and maybe abandon native windows support in favour of VM) @@ -14,6 +16,10 @@ add to help text: To disable a web service remove it from WEB-INF/sun-jaxws.xml rename jaba.war to jabaws.war and make sure jabaws context path is used throughout. Current stat collector has to rely on file dates! +To change this you need +1) Collect all the stats in old format into the DB +2) Update the code to get the date out of the file. +Can be done once JABAWS 1 is replaced with 2. Globprot need a proper reference to bio python and sav_gol binaries -> they should be somehow taken from disembl. diff --git a/webservices/compbio/ws/server/resource/AAConWS.wsdl b/webservices/compbio/ws/server/resource/AAConWS.wsdl index 9329c44..8ff9829 100644 --- a/webservices/compbio/ws/server/resource/AAConWS.wsdl +++ b/webservices/compbio/ws/server/resource/AAConWS.wsdl @@ -69,11 +69,11 @@ - - + + - - + + @@ -81,11 +81,11 @@ - - + + - - + + @@ -132,17 +132,17 @@ - - - + + + - - - + + + @@ -255,7 +255,7 @@ - + @@ -273,7 +273,7 @@ - + diff --git a/webservices/compbio/ws/server/resource/AAConWS_schema1.xsd b/webservices/compbio/ws/server/resource/AAConWS_schema1.xsd index ce87a32..99b9b4d 100644 --- a/webservices/compbio/ws/server/resource/AAConWS_schema1.xsd +++ b/webservices/compbio/ws/server/resource/AAConWS_schema1.xsd @@ -61,15 +61,52 @@ - + + + + + - + - + - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -114,52 +151,15 @@ - - - - - - - - - - - - - - - - - - - - + - - - - - + - - - - - - - - - - - - - + - - - + @@ -242,20 +242,16 @@ - - - - - + - + + - + - - + @@ -285,40 +281,44 @@ - + + + + + - + - + - + + - + - + - + - + - + - - + - + - + @@ -342,6 +342,13 @@ + + + + + + + @@ -355,12 +362,5 @@ - - - - - - - diff --git a/webservices/compbio/ws/server/resource/ClustalWS.wsdl b/webservices/compbio/ws/server/resource/ClustalWS.wsdl index b52327b..d317bac 100644 --- a/webservices/compbio/ws/server/resource/ClustalWS.wsdl +++ b/webservices/compbio/ws/server/resource/ClustalWS.wsdl @@ -69,11 +69,11 @@ - - + + - - + + @@ -81,11 +81,11 @@ - - + + - - + + @@ -132,17 +132,17 @@ - - - + + + - - - + + + @@ -255,7 +255,7 @@ - + @@ -273,7 +273,7 @@ - + diff --git a/webservices/compbio/ws/server/resource/ClustalWS_schema1.xsd b/webservices/compbio/ws/server/resource/ClustalWS_schema1.xsd index c432550..05f2a89 100644 --- a/webservices/compbio/ws/server/resource/ClustalWS_schema1.xsd +++ b/webservices/compbio/ws/server/resource/ClustalWS_schema1.xsd @@ -161,6 +161,32 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -192,32 +218,6 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - diff --git a/webservices/compbio/ws/server/resource/DisemblWS.wsdl b/webservices/compbio/ws/server/resource/DisemblWS.wsdl index 3635014..324f199 100644 --- a/webservices/compbio/ws/server/resource/DisemblWS.wsdl +++ b/webservices/compbio/ws/server/resource/DisemblWS.wsdl @@ -24,18 +24,18 @@ - - - - - - + + + + + + @@ -45,12 +45,6 @@ - - - - - - @@ -63,17 +57,17 @@ - - + + - - + + - - + + - - + + @@ -81,11 +75,17 @@ - - + + - - + + + + + + + + @@ -96,13 +96,6 @@ - - - - - - - @@ -111,15 +104,18 @@ + + + + + + + - - - - @@ -128,6 +124,18 @@ + + + + + + + + + + + + @@ -136,14 +144,6 @@ - - - - - - - - @@ -168,7 +168,7 @@ - + @@ -185,8 +185,11 @@ + + + - + @@ -203,9 +206,6 @@ - - - @@ -219,7 +219,7 @@ - + @@ -228,7 +228,7 @@ - + @@ -237,7 +237,7 @@ - + @@ -246,7 +246,7 @@ - + @@ -255,7 +255,7 @@ - + @@ -264,7 +264,7 @@ - + @@ -273,7 +273,7 @@ - + diff --git a/webservices/compbio/ws/server/resource/DisemblWS_schema1.xsd b/webservices/compbio/ws/server/resource/DisemblWS_schema1.xsd index ab7d3ee..321cfdd 100644 --- a/webservices/compbio/ws/server/resource/DisemblWS_schema1.xsd +++ b/webservices/compbio/ws/server/resource/DisemblWS_schema1.xsd @@ -61,15 +61,52 @@ - + + + + + - + - + - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -114,52 +151,15 @@ - - - - - - - - - - - - - - - - - - - - + - - - - - + - - - - - - - - - - - - - + - - - + @@ -209,20 +209,10 @@ - - - - - - - - - - - + - - + + @@ -240,6 +230,38 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -278,34 +300,32 @@ - - - - + + - + - + - + - - + + - + - + - + - + @@ -322,25 +342,12 @@ - - - - - - - - - - - - - - - - - - - + + + + + + @@ -355,12 +362,5 @@ - - - - - - - diff --git a/webservices/compbio/ws/server/resource/GlobPlotWS.wsdl b/webservices/compbio/ws/server/resource/GlobPlotWS.wsdl index b87e366..9577bb8 100644 --- a/webservices/compbio/ws/server/resource/GlobPlotWS.wsdl +++ b/webservices/compbio/ws/server/resource/GlobPlotWS.wsdl @@ -24,18 +24,18 @@ - - - - - - + + + + + + @@ -45,12 +45,6 @@ - - - - - - @@ -63,17 +57,17 @@ - - + + - - + + - - + + - - + + @@ -81,11 +75,17 @@ - - + + - - + + + + + + + + @@ -96,13 +96,6 @@ - - - - - - - @@ -111,15 +104,18 @@ + + + + + + + - - - - @@ -128,6 +124,18 @@ + + + + + + + + + + + + @@ -136,14 +144,6 @@ - - - - - - - - @@ -168,7 +168,7 @@ - + @@ -185,8 +185,11 @@ + + + - + @@ -203,9 +206,6 @@ - - - @@ -219,7 +219,7 @@ - + @@ -228,7 +228,7 @@ - + @@ -237,7 +237,7 @@ - + @@ -246,7 +246,7 @@ - + @@ -255,7 +255,7 @@ - + @@ -264,7 +264,7 @@ - + @@ -273,7 +273,7 @@ - + diff --git a/webservices/compbio/ws/server/resource/GlobPlotWS_schema1.xsd b/webservices/compbio/ws/server/resource/GlobPlotWS_schema1.xsd index 49ed492..72ac6ff 100644 --- a/webservices/compbio/ws/server/resource/GlobPlotWS_schema1.xsd +++ b/webservices/compbio/ws/server/resource/GlobPlotWS_schema1.xsd @@ -61,18 +61,6 @@ - - - - - - - - - - - - @@ -135,22 +123,22 @@ - - - - + + - + - + - + - - + + + + @@ -165,47 +153,59 @@ - + + + + + + + + + + + + - + + + - - + + + + - + - + - + - - - - + - - - - - - - - - + + + + - + - - - + + + + + + + + @@ -255,20 +255,23 @@ - - + + + + + - + - + - + - - + + @@ -310,38 +313,42 @@ - - - - + + - + - + - + - - + + - + - + - + - - + + + + + + + + @@ -355,12 +362,5 @@ - - - - - - - diff --git a/webservices/compbio/ws/server/resource/IUPredWS.wsdl b/webservices/compbio/ws/server/resource/IUPredWS.wsdl index e589bb1..f10eb02 100644 --- a/webservices/compbio/ws/server/resource/IUPredWS.wsdl +++ b/webservices/compbio/ws/server/resource/IUPredWS.wsdl @@ -24,18 +24,18 @@ - - - - - - + + + + + + @@ -45,12 +45,6 @@ - - - - - - @@ -63,17 +57,17 @@ - - + + - - + + - - + + - - + + @@ -81,11 +75,17 @@ - - + + - - + + + + + + + + @@ -96,13 +96,6 @@ - - - - - - - @@ -111,15 +104,18 @@ + + + + + + + - - - - @@ -128,6 +124,18 @@ + + + + + + + + + + + + @@ -136,14 +144,6 @@ - - - - - - - - @@ -168,7 +168,7 @@ - + @@ -185,8 +185,11 @@ + + + - + @@ -203,9 +206,6 @@ - - - @@ -219,7 +219,7 @@ - + @@ -228,7 +228,7 @@ - + @@ -237,7 +237,7 @@ - + @@ -246,7 +246,7 @@ - + @@ -255,7 +255,7 @@ - + @@ -264,7 +264,7 @@ - + @@ -273,7 +273,7 @@ - + diff --git a/webservices/compbio/ws/server/resource/IUPredWS_schema1.xsd b/webservices/compbio/ws/server/resource/IUPredWS_schema1.xsd index 54d1b3d..9c46d87 100644 --- a/webservices/compbio/ws/server/resource/IUPredWS_schema1.xsd +++ b/webservices/compbio/ws/server/resource/IUPredWS_schema1.xsd @@ -61,15 +61,52 @@ - + + + + + - + - + - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -114,52 +151,15 @@ - - - - - - - - - - - - - - - - - - - - + - - - - - + - - - - - - - - - - - - - + - - - + @@ -209,34 +209,42 @@ - - + + + + + - + - + - + - - + + - + - - - - - - - - - + + + + + + + + + + + + + + @@ -278,54 +286,46 @@ - - - - - - - - - - + + - + - - + - + - + + - + - + + + + + + + + + - + - - - - - - - - + - - + @@ -342,6 +342,13 @@ + + + + + + + @@ -355,12 +362,5 @@ - - - - - - - diff --git a/webservices/compbio/ws/server/resource/JronnWS.wsdl b/webservices/compbio/ws/server/resource/JronnWS.wsdl index 244be15..baca048 100644 --- a/webservices/compbio/ws/server/resource/JronnWS.wsdl +++ b/webservices/compbio/ws/server/resource/JronnWS.wsdl @@ -24,18 +24,18 @@ - - - - - - + + + + + + @@ -45,12 +45,6 @@ - - - - - - @@ -63,17 +57,17 @@ - - + + - - + + - - + + - - + + @@ -81,11 +75,17 @@ - - + + - - + + + + + + + + @@ -96,13 +96,6 @@ - - - - - - - @@ -111,15 +104,18 @@ + + + + + + + - - - - @@ -128,6 +124,18 @@ + + + + + + + + + + + + @@ -136,14 +144,6 @@ - - - - - - - - @@ -168,7 +168,7 @@ - + @@ -185,8 +185,11 @@ + + + - + @@ -203,9 +206,6 @@ - - - @@ -219,7 +219,7 @@ - + @@ -228,7 +228,7 @@ - + @@ -237,7 +237,7 @@ - + @@ -246,7 +246,7 @@ - + @@ -255,7 +255,7 @@ - + @@ -264,7 +264,7 @@ - + @@ -273,7 +273,7 @@ - + diff --git a/webservices/compbio/ws/server/resource/JronnWS_schema1.xsd b/webservices/compbio/ws/server/resource/JronnWS_schema1.xsd index ce87a32..1da2262 100644 --- a/webservices/compbio/ws/server/resource/JronnWS_schema1.xsd +++ b/webservices/compbio/ws/server/resource/JronnWS_schema1.xsd @@ -61,15 +61,52 @@ - + + + + + - + - + - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -114,52 +151,15 @@ - - - - - - - - - - - - - - - - - - - - + - - - - - + - - - - - - - - - - - - - + - - - + @@ -242,20 +242,16 @@ - - - - - + - + + - + - - + @@ -297,28 +293,32 @@ - + + + + + - + - + - + + - + - - + - + - + @@ -342,6 +342,13 @@ + + + + + + + @@ -355,12 +362,5 @@ - - - - - - - diff --git a/webservices/compbio/ws/server/resource/MafftWS.wsdl b/webservices/compbio/ws/server/resource/MafftWS.wsdl index 86bf801..c7bfe2e 100644 --- a/webservices/compbio/ws/server/resource/MafftWS.wsdl +++ b/webservices/compbio/ws/server/resource/MafftWS.wsdl @@ -69,11 +69,11 @@ - - + + - - + + @@ -81,11 +81,11 @@ - - + + - - + + @@ -132,17 +132,17 @@ - - - + + + - - - + + + @@ -255,7 +255,7 @@ - + @@ -273,7 +273,7 @@ - + diff --git a/webservices/compbio/ws/server/resource/MafftWS_schema1.xsd b/webservices/compbio/ws/server/resource/MafftWS_schema1.xsd index c432550..05f2a89 100644 --- a/webservices/compbio/ws/server/resource/MafftWS_schema1.xsd +++ b/webservices/compbio/ws/server/resource/MafftWS_schema1.xsd @@ -161,6 +161,32 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -192,32 +218,6 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - diff --git a/webservices/compbio/ws/server/resource/MuscleWS.wsdl b/webservices/compbio/ws/server/resource/MuscleWS.wsdl index 8993c91..867020c 100644 --- a/webservices/compbio/ws/server/resource/MuscleWS.wsdl +++ b/webservices/compbio/ws/server/resource/MuscleWS.wsdl @@ -69,11 +69,11 @@ - - + + - - + + @@ -81,11 +81,11 @@ - - + + - - + + @@ -132,17 +132,17 @@ - - - + + + - - - + + + @@ -255,7 +255,7 @@ - + @@ -273,7 +273,7 @@ - + diff --git a/webservices/compbio/ws/server/resource/MuscleWS_schema1.xsd b/webservices/compbio/ws/server/resource/MuscleWS_schema1.xsd index 0895916..e6c3574 100644 --- a/webservices/compbio/ws/server/resource/MuscleWS_schema1.xsd +++ b/webservices/compbio/ws/server/resource/MuscleWS_schema1.xsd @@ -152,6 +152,32 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -183,32 +209,6 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - diff --git a/webservices/compbio/ws/server/resource/RegistryWS.wsdl b/webservices/compbio/ws/server/resource/RegistryWS.wsdl index 6760f66..8d7ec01 100644 --- a/webservices/compbio/ws/server/resource/RegistryWS.wsdl +++ b/webservices/compbio/ws/server/resource/RegistryWS.wsdl @@ -12,12 +12,6 @@ - - - - - - @@ -30,6 +24,12 @@ + + + + + + @@ -47,10 +47,6 @@ - - - - @@ -59,6 +55,10 @@ + + + + @@ -79,7 +79,7 @@ - + @@ -88,7 +88,7 @@ - + @@ -97,7 +97,7 @@ - + diff --git a/webservices/compbio/ws/server/resource/TcoffeeWS.wsdl b/webservices/compbio/ws/server/resource/TcoffeeWS.wsdl index 1ea1fcd..415612b 100644 --- a/webservices/compbio/ws/server/resource/TcoffeeWS.wsdl +++ b/webservices/compbio/ws/server/resource/TcoffeeWS.wsdl @@ -69,11 +69,11 @@ - - + + - - + + @@ -81,11 +81,11 @@ - - + + - - + + @@ -132,17 +132,17 @@ - - - + + + - - - + + + @@ -255,7 +255,7 @@ - + @@ -273,7 +273,7 @@ - + diff --git a/webservices/compbio/ws/server/resource/TcoffeeWS_schema1.xsd b/webservices/compbio/ws/server/resource/TcoffeeWS_schema1.xsd index 18262c9..9f5bbee 100644 --- a/webservices/compbio/ws/server/resource/TcoffeeWS_schema1.xsd +++ b/webservices/compbio/ws/server/resource/TcoffeeWS_schema1.xsd @@ -152,6 +152,32 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -183,32 +209,6 @@ - - - - - - - - - - - - - - - - - - - - - - - - - -